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[186477_at]

Description F36H12.14 /REP_DB=WormBase Gene ID /WP=CE09984 /TR=O76714 /GB=AAC26936.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.5
(-3)
A 		6.3
(0.4)
A 		9.2
(3)
A 		8.3
(2.2)
A 		7
B 1.5
(-3)
A 		10.3
(-0.9)
A 		1.5
(-3)
A 		26.9
(3)
A 		25
C 25.5
(1.4)
A 		2.2
(-3)
A 		3.1
(-2.8)
A 		34
(3)
A 		32
avr 9.8
(-1.3) 		6.3
(-2.4) 		4.6
(-3) 		23.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 2.1
(-3)
A 		1.6
(-3)
A 		21.6
(-1.4)
A 		4.1
(-2.8)
A 		53.5
(1)
A 		79
(3)
A 		77
B 3.9
(-2.8)
A 		5.1
(-2.7)
A 		3.4
(-2.9)
A 		2.3
(-3)
A 		40.3
(0.6)
A 		65.4
(3)
P 		63
C 1.4
(-3)
A 		2.5
(-2.9)
A 		1.2
(-3)
A 		5.7
(-2.7)
A 		22.4
(-1.5)
A 		85
(3)
P 		84
avr 2.5
(-3) 		3.1
(-3) 		8.7
(-2.5) 		4
(-2.9) 		38.7
(-0.1) 		76.5
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		1.4
(-1)
A 		2.4
(3)
A 		1.2
(-1.8)
A 		2
B 0.5
(-2.8)
A 		2.6
(-0.4)
A 		0.3
(-3)
A 		5.7
(3)
A 		5
C 8.4
(3)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		5.7
(0.9)
A 		8
avr 3.3
(1.1) 		1.5
(-2.6) 		1.3
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.9)
A 		4.7
(-1.6)
A 		1
(-2.8)
A 		16.1
(2)
A 		19.2
(3)
A 		19
B 1.4
(-2.8)
A 		1.7
(-2.7)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		16.4
(1)
A 		24.4
(3)
P 		24
C 0.5
(-3)
A 		0.8
(-2.9)
A 		0.3
(-3)
A 		1.2
(-2.8)
A 		7.3
(-1.5)
A 		28.5
(3)
P 		28
avr 0.8
(-3) 		1
(-2.9) 		1.9
(-2.7) 		0.9
(-3) 		13.3
(0.2) 		24
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10920
Sequence Type Exemplar sequence
Representative Public ID F36H12.14 NCBI
Target Description F36H12.14 /REP_DB=WormBase Gene ID /WP=CE09984 /TR=O76714 /GB=AAC26936.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068361 NCBI Caenorhabditis elegans F36H12.14 (F36H12.14) mRNA, complete cds. 11/11 None
SNAP00000002640 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5263055:5264422:-1 11/11 None
GENEFINDER00000002663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5263091:5264422:-1 11/11 None
F36H12.14 ENSEMBL cdna:known chromosome:CEL140:IV:5263055:5264422:-1 gene:F36H12.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5263060-5264428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.14
Entrez Gene 185399 Entrez gene
SwissProt O76714 EMBL-EBI
WormBase CE09984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 1.0E-147
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 1.0E-143
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 1.0E-141
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 2.0E-28
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 7.0E-26
blast CAB04688 Hypothetical protein T05F1.5 [Caenorhabditis elegans] ref|NP_492559.1| T05F1.5 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186477_AT
gtgagatgatcgacgggcagcacgatgaaaatgcggatcgaatggagggagttgagcaag
atgaccaagatggcgacgtgaaaaatggtatcctccagcaaatgaatgctgctcaaagtg
gtcgtgcgatgtcacagaacaggcgaaaaattcaagaaactcggaaaagaaagatgcgcc
ggaagtctgagacatcggagccaatcttgaaatctaagaaaatggatgaaaactggagtg
gtgttgcaacagaacgcttcacctggttcaaaggtcaaactaaaagacctgagaacgcca
aacaactcaatcaagaggcaaccagagttggcatcaagccaattgaaattcaacatgctg
tattgcctttcaacaatccagctaagaactaccatttctacaactttgcaacaaacaaca
aagaggaagcagcaatgttgaagaacttaatcccagctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGATGATCGACGGGCAGCACGA 565 481 269 Antisense
AATGCTGCTCAAAGTGGTCGTGCGA 316 167 373 Antisense
GGTCGTGCGATGTCACAGAACAGGC 360 503 388 Antisense
AAGATGCGCCGGAAGTCTGAGACAT 386 155 439 Antisense
GCAACAGAACGCTTCACCTGGTTCA 243 319 514 Antisense
AAAGACCTGAGAACGCCAAACAACT 97 123 551 Antisense
GGCAACCAGAGTTGGCATCAAGCCA 702 533 585 Antisense
TTCAACATGCTGTATTGCCTTTCAA 171 685 617 Antisense
TTGCCTTTCAACAATCCAGCTAAGA 12 701 631 Antisense
ACTACCATTTCTACAACTTTGCAAC 703 101 656 Antisense
GTTGAAGAACTTAATCCCAGCTGAT 380 439 705 Antisense
Sequence Source Affymetrix Proprietary Database