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[186476_at]

Description Y16E11A.1 /REP_DB=WormBase Gene ID /WP=CE25222 /TR=Q9N487 /GB=AAF60435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.6
(-2.3)
A 		26.5
(2)
A 		1.3
(-3)
A 		31.6
(3)
A 		30
B 10.7
(-2.2)
A 		50.3
(3)
P 		4.9
(-3)
A 		41.7
(1.9)
A 		45
C 5.9
(-3)
A 		19.9
(-0.7)
A 		12.7
(-1.9)
A 		41.9
(3)
A 		36
avr 7.1
(-2.9) 		32.2
(1.8) 		6.3
(-3) 		38.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 26.7
(3)
A 		24.1
(2.1)
A 		9.4
(-3)
A 		13.5
(-1.6)
A 		11.2
(-2.4)
A 		14.8
(-1.1)
A 		17
B 22.8
(-0.2)
P 		10.8
(-3)
A 		36.4
(3)
P 		21.9
(-0.4)
A 		21.6
(-0.5)
A 		21
(-0.6)
P 		26
C 1.6
(-3)
A 		38
(2.8)
M 		27.6
(1.2)
A 		39.1
(3)
P 		24.1
(0.6)
P 		23.7
(0.5)
A 		38
avr 17
(-3) 		24.3
(2.6) 		24.5
(2.8) 		24.8
(3) 		19
(-1.5) 		19.8
(-0.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-1.5)
A 		5.8
(3)
A 		0.3
(-3)
A 		4.6
(1.7)
A 		6
B 3.4
(-1.8)
A 		12.4
(3)
P 		1.1
(-3)
A 		8.9
(1.1)
A 		11
C 2
(-3)
A 		5.7
(1.4)
A 		4.4
(-0.2)
A 		7.1
(3)
A 		5
avr 2.4
(-2.5) 		8
(3) 		1.9
(-3) 		6.9
(1.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.9
(-0.4)
A 		8.6
(3)
A 		2.1
(-3)
A 		3.4
(-1.8)
A 		3.4
(-1.8)
A 		3.6
(-1.6)
A 		7
B 7.9
(2)
P 		3.6
(-3)
A 		8.8
(3)
P 		5.8
(-0.5)
A 		8.8
(3)
A 		7.8
(1.8)
P 		5
C 0.6
(-3)
A 		11.6
(3)
M 		7
(0.5)
A 		7.9
(1)
P 		7.8
(0.9)
P 		7.9
(1)
A 		11
avr 4.5
(-3) 		7.9
(3) 		6
(-0.4) 		5.7
(-0.9) 		6.7
(0.9) 		6.4
(0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5967
Sequence Type Exemplar sequence
Representative Public ID Y16E11A.1 NCBI
Target Description Y16E11A.1 /REP_DB=WormBase Gene ID /WP=CE25222 /TR=Q9N487 /GB=AAF60435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061743(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061743 NCBI Caenorhabditis elegans Y16E11A.1 (Y16E11A.1) mRNA, complete cds. 10/11 None
SNAP00000020801 ENSEMBL cdna:SNAP chromosome:CEL140:II:1989311:1990538:1 11/11 None
GENEFINDER00000020802 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1989311:1990538:1 11/11 None
Y16E11A.1 ENSEMBL cdna:known chromosome:CEL140:II:1987286:1990536:1 gene:Y16E11A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1987284-1990537(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y16E11A.1
Entrez Gene 189440 Entrez gene
SwissProt Q9N487 EMBL-EBI
WormBase CE33476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 0.0
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 1.0E-135
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-125
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 1.0E-113
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-109
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 1.0E-105
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.9E-58
Pfam IPR002083 EMBL-EBI MATH 4.0E-22
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 3.7E-31
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 1.7E-30
Pfam IPR002083 EMBL-EBI MATH 4.9E-6
Sequence
Target Sequence 
>C. ELEGANS:186476_AT
gaaacggttggtctgacttcatcagttggaaggaattgaaaagtgattatatggttgatg
atagtattgtagttgaagctcatgtcaaaatattcaaaataactgactctccgtgcactg
aaaacgaaaaccagaaaatatttctgttgaatcacaccgttagaaatgtttcgagtatta
aagaaggtagtaactatttcaccaaaactgagaaacgattcaatattccatggagtctac
gaattcatagagaaaatgggttttttggattatgtttgcaatgtgaaaaagaacagtcca
atagaaggaactggacagttgaagtggattacaagctaaaactaatctccgtaaatggtc
aaaacgtatctctccaactaagatacattttcaacaagccatatgctcacgttaagataa
ctaaaatgactggatgtgaagaggatacaagtattgatgacctggacgatgaattctctg
attgtgtcatcaatgtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGGTTGGTCTGACTTCATCAG 683 355 938 Antisense
ATTCAAAATAACTGACTCTCCGTGC 455 11 1029 Antisense
GAATCACACCGTTAGAAATGTTTCG 313 327 1086 Antisense
TATTCCATGGAGTCTACGAATTCAT 478 663 1161 Antisense
CAAGCTAAAACTAATCTCCGTAAAT 591 183 1269 Antisense
GGTCAAAACGTATCTCTCCAACTAA 426 503 1294 Antisense
TAAGATACATTTTCAACAAGCCATA 569 637 1316 Antisense
CAACAAGCCATATGCTCACGTTAAG 709 189 1329 Antisense
TACAAGTATTGATGACCTGGACGAT 152 643 1383 Antisense
GACCTGGACGATGAATTCTCTGATT 344 383 1396 Antisense
TCTCTGATTGTGTCATCAATGTCGG 529 611 1412 Antisense
Sequence Source Affymetrix Proprietary Database