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[186475_at]

Description Y106G6G.4 /REP_DB=WormBase Gene ID /WP=CE23214 /TR=Q9XWA9 /GB=CAA22054.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 78      4grp_total > 20      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 37.5
(-0.9)
P 		30.1
(-1.4)
A 		5.5
(-3)
A 		95.2
(3)
P 		90
B 38
(2.3)
A 		41.8
(3)
A 		14.2
(-2.1)
A 		9.5
(-3)
A 		32
C 15.4
(-3)
A 		33.5
(0.2)
A 		21.5
(-1.9)
A 		49.8
(3)
A 		34
avr 30.3
(-0.4) 		35.1
(0.4) 		13.7
(-3) 		51.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 87.9
(-2.5)
P 		72.5
(-2.7)
P 		47.3
(-3)
P 		70.2
(-2.7)
P 		293.3
(-0.2)
P 		574.7
(3)
P 		527
B 41.1
(-3)
P 		44
(-2.9)
M 		36.4
(-3)
A 		46.8
(-2.9)
A 		275.3
(-0.5)
P 		611.5
(3)
P 		575
C 47.9
(-2.6)
P 		49.6
(-2.6)
M 		10.5
(-3)
A 		81.9
(-2.2)
P 		201.6
(-0.9)
P 		564.9
(3)
P 		554
avr 59
(-2.7) 		55.4
(-2.7) 		31.4
(-3) 		66.3
(-2.6) 		256.7
(-0.6) 		583.7
(3) 		552
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.7
(2.9)
P 		6.5
(-0.6)
A 		1.4
(-3)
A 		13.9
(3)
P 		13
B 12.1
(3)
A 		10.3
(1.9)
A 		3.3
(-2.2)
A 		2
(-3)
A 		10
C 5.1
(-3)
A 		9.6
(3)
A 		7.5
(0.2)
A 		8.4
(1.4)
A 		5
avr 10.3
(3) 		8.8
(1.5) 		4.1
(-3) 		8.1
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 16.2
(-2.7)
P 		25.8
(-2.3)
P 		10.3
(-3)
P 		17.8
(-2.7)
P 		88.5
(0.6)
P 		139.9
(3)
P 		130
B 14.3
(-2.9)
P 		14.7
(-2.8)
M 		8.9
(-3)
A 		12.4
(-2.9)
A 		111.8
(-0.2)
P 		228
(3)
P 		219
C 17.7
(-2.5)
P 		15.1
(-2.6)
M 		2.7
(-3)
A 		16.5
(-2.6)
P 		65.2
(-1)
P 		189.1
(3)
P 		186
avr 16.1
(-2.7) 		18.5
(-2.6) 		7.3
(-3) 		15.6
(-2.7) 		88.5
(-0.3) 		185.7
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1635
Sequence Type Exemplar sequence
Representative Public ID Y106G6G.4 NCBI
Target Description Y106G6G.4 /REP_DB=WormBase Gene ID /WP=CE23214 /TR=Q9XWA9 /GB=CAA22054.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060304 NCBI Caenorhabditis elegans Y106G6G.4 (Y106G6G.4) mRNA, complete cds. 11/11 None
SNAP00000021077 ENSEMBL cdna:SNAP chromosome:CEL140:I:10329907:10331374:-1 11/11 None
GENEFINDER00000021082 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10329907:10331374:-1 11/11 None
Y106G6G.4 ENSEMBL cdna:known chromosome:CEL140:I:10329858:10331374:-1 gene:Y106G6G.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10329837-10331305(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6G.4
Entrez Gene 260220 Entrez gene
SwissProt Q9XWA9 EMBL-EBI
WormBase CE23214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22054 Hypothetical protein Y106G6G.4 [Caenorhabditis elegans] ref|NP_492705.1| Y106G6G.4 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492705.1 1 112-134
Y106G6G.4 1 112-134
SNAP00000021077 1 112-134
GENEFINDER00000021082 1 112-134
Sequence
Target Sequence 
>C. ELEGANS:186475_AT
gttgttttgcagctgtcacgatcttccttgctgtcatctgcattcttggtcttggagcaa
tgttgcttttgaatgaattcttggcggaagaggatacaaagagtgatgccttgactggag
gatctaacacgaccaacaccacgacagcacctccagctactaactccactcagattattt
ccactttgaggcctccgctgaaccgctctaccagttctacagatgtgaaagagaacggca
caacgcacgttacatctgccaatttgacaggaacaacgaagatccctgtgattgtcacta
ctatcggattcaccattacctccacagatcctcctccaactacaaactcatcaaattcaa
ctgtggaatctgtaacttcagttattcccatcaatagctcaactgttcctgtcttgaata
ctacgcttcaaacttctacgctcgctgaaagttcatcccaatctgttgtcactgttgctg
tcactgatgctattgttgccaattcaactgatatcccggatccgataactgccaagctaa
atggaacggcatccactgcagatcgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTTTGCAGCTGTCACGATCTT 617 437 362 Antisense
CCTTGCTGTCATCTGCATTCTTGGT 413 269 387 Antisense
GGAGGATCTAACACGACCAACACCA 682 513 478 Antisense
AGATTATTTCCACTTTGAGGCCTCC 188 65 533 Antisense
CACAACGCACGTTACATCTGCCAAT 217 195 600 Antisense
CTACTATCGGATTCACCATTACCTC 538 223 659 Antisense
TACTACGCTTCAAACTTCTACGCTC 335 645 780 Antisense
AAGTTCATCCCAATCTGTTGTCACT 186 157 810 Antisense
GCTGTCACTGATGCTATTGTTGCCA 564 295 838 Antisense
TGATATCCCGGATCCGATAACTGCC 177 563 870 Antisense
AACGGCATCCACTGCAGATCGTGAT 161 143 906 Antisense
Sequence Source Affymetrix Proprietary Database