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[186474_at]

Description T10B11.2 /REP_DB=WormBase Gene ID /WP=CE18241 /TR=Q9TZI1 /GB=AAC67466.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 66      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 1150.2
(3)
P 		1040
(2.2)
P 		857.6
(0.8)
P 		355.7
(-3)
P 		795
B 1236.4
(3)
P 		1049.1
(1.5)
P 		968.3
(0.9)
P 		480.5
(-3)
P 		756
C 1271.2
(3)
P 		1006.3
(1.1)
P 		1076
(1.6)
P 		456.1
(-3)
P 		815
avr 1219.3
(3) 		1031.8
(1.6) 		967.3
(1.1) 		430.8
(-3) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 1058.1
(-3)
P 		1450.2
(1)
P 		1400.1
(0.5)
P 		1652.1
(3)
P 		1208.4
(-1.5)
P 		1294.2
(-0.6)
P 		594
B 1071.3
(-3)
P 		1146.7
(-2.1)
P 		1598.3
(3)
P 		1302.8
(-0.4)
P 		1325.4
(-0.1)
P 		1109.7
(-2.6)
P 		527
C 1404.8
(0.8)
P 		1099.2
(-3)
P 		1502.6
(2)
P 		1581.6
(3)
P 		1260.4
(-1)
P 		1297.2
(-0.5)
P 		482
avr 1178.1
(-3) 		1232
(-2) 		1500.3
(2.8) 		1512.2
(3) 		1264.7
(-1.4) 		1233.7
(-2) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 418.8
(3)
P 		225.8
(-0.2)
P 		224.2
(-0.2)
P 		52.1
(-3)
P 		367
B 394.3
(3)
P 		259.1
(0.2)
P 		224.4
(-0.5)
P 		102.4
(-3)
P 		292
C 420.8
(3)
P 		289.3
(0.7)
P 		375
(2.2)
P 		76.9
(-3)
P 		344
avr 411.3
(3) 		258.1
(0.2) 		274.5
(0.5) 		77.1
(-3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 195
(-3)
P 		515.8
(3)
P 		304.9
(-0.9)
P 		419
(1.2)
P 		364.7
(0.2)
P 		315.1
(-0.8)
P 		321
B 372.7
(-2.1)
P 		381.7
(-1.9)
P 		388.1
(-1.7)
P 		345.1
(-3)
P 		538.5
(3)
P 		413.8
(-0.9)
P 		193
C 520.7
(3)
P 		335.4
(-2.5)
P 		382.4
(-1.1)
P 		318.1
(-3)
P 		407.9
(-0.3)
P 		434.3
(0.4)
P 		203
avr 362.8
(-2.7) 		411
(1) 		358.5
(-3) 		360.7
(-2.8) 		437
(3) 		387.7
(-0.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1880
Sequence Type Exemplar sequence
Representative Public ID T10B11.2 NCBI
Target Description T10B11.2 /REP_DB=WormBase Gene ID /WP=CE18241 /TR=Q9TZI1 /GB=AAC67466.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059576 NCBI Caenorhabditis elegans T10B11.2 (T10B11.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000021321 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6939292:6944959:1 11/11 None
SNAP00000021309 ENSEMBL cdna:SNAP chromosome:CEL140:I:6941985:6944959:1 11/11 None
T10B11.2 ENSEMBL cdna:known chromosome:CEL140:I:6939270:6945050:1 gene:T10B11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6939222-6944890(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.2
Entrez Gene 172423 Entrez gene
SwissProt Q9TZI1 EMBL-EBI
WormBase CE18241 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7205 protein kinase C activation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4143 diacylglycerol kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491977 T10B11.2 [Caenorhabditis elegans] gb|AAC67466.1| Hypothetical protein T10B11.2 [Caenorhabditis elegans] 0.0
blast CAE67276 Hypothetical protein CBG12724 [Caenorhabditis briggsae] 0.0
blast AAH74350 MGC84197 protein [Xenopus laevis] 4.0E-44
blast AAH74350 MGC84197 protein [Xenopus laevis] 5.0E-44
Sequence
Target Sequence 
>C. ELEGANS:186474_AT
agtggagtgctcttcgaacaacaattcgtcatccaatttatcgtggaatggtacaattct
ctttatcacataaagaaaatgttaatccaaaggatcaacttccaccgtgtctagagccat
gcccagtttgtatgaaacctcaaggaaatgataaatacgactatcactggcatgctgaat
ttactcacgtcatttgctgtgttattccaacagttactccatttactccatatggacttg
ctccttttacaggaattggtgacggaacacttgacttggcactggttcccagaatctcta
gatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGAGTGCTCTTCGAACAACAAT 258 59 1061 Antisense
TGGTACAATTCTCTTTATCACATAA 686 551 1109 Antisense
CAAAGGATCAACTTCCACCGTGTCT 45 193 1148 Antisense
TCTAGAGCCATGCCCAGTTTGTATG 608 613 1170 Antisense
AAATACGACTATCACTGGCATGCTG 245 107 1213 Antisense
GGCATGCTGAATTTACTCACGTCAT 161 537 1229 Antisense
ACGTCATTTGCTGTGTTATTCCAAC 353 93 1247 Antisense
CCAACAGTTACTCCATTTACTCCAT 192 275 1267 Antisense
TACTCCATATGGACTTGCTCCTTTT 145 647 1284 Antisense
ACGGAACACTTGACTTGGCACTGGT 139 97 1322 Antisense
CACTGGTTCCCAGAATCTCTAGATT 611 197 1340 Antisense
Sequence Source Affymetrix Proprietary Database