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[186472_at]

Description R01B10.1 /REP_DB=WormBase Gene ID /WP=CE25962 /TR=O61973 /GB=AAC17767.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 39      6grp_total > 74      4grp_total > 11      6grp_cgc > 67      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3521
1 2 3 4 range
A 3844.6
(-2.5)
P 		4463.9
(-1.3)
P 		3601.7
(-3)
P 		6722.5
(3)
P 		3121
B 3881.4
(-1.6)
P 		3628.3
(-2.6)
P 		3537
(-3)
P 		5045.5
(3)
P 		1509
C 3630.8
(-1.8)
P 		3502.7
(-2.2)
P 		3201.3
(-3)
P 		5376.6
(3)
P 		2175
avr 3785.6
(-2.1) 		3865
(-1.9) 		3446.7
(-3) 		5714.9
(3) 		2268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4895
1 2 3 4 5 6 range
A 4790.9
(-2.3)
P 		4323.3
(-3)
P 		6884.4
(0.7)
P 		8437.2
(2.9)
P 		6543.6
(0.2)
P 		8519.4
(3)
P 		4196
B 4037.8
(-3)
P 		4408.6
(-2.4)
P 		6517.1
(1)
P 		6755.2
(1.4)
P 		6841.3
(1.6)
P 		7731.6
(3)
P 		3694
C 4116
(-3)
P 		4615.2
(-2.4)
P 		7099.6
(0.7)
P 		8933
(3)
P 		7127.5
(0.8)
P 		8258.2
(2.2)
P 		4817
avr 4314.9
(-3) 		4449
(-2.8) 		6833.7
(0.9) 		8041.8
(2.8) 		6837.5
(0.9) 		8169.7
(3) 		3855
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 1399.8
(3)
P 		969
(-2.6)
P 		941.5
(-3)
P 		984
(-2.4)
P 		458
B 1237.7
(3)
P 		896.1
(-1.9)
P 		819.6
(-3)
P 		1075.2
(0.7)
P 		418
C 1201.9
(3)
P 		1007
(-1)
P 		1115.8
(1.3)
P 		906.6
(-3)
P 		295
avr 1279.8
(3) 		957.4
(-3) 		959
(-3) 		988.6
(-2.4) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2000
1 2 3 4 5 6 range
A 883.2
(-3)
P 		1537.6
(0.1)
P 		1499.3
(-0.1)
P 		2139.9
(3)
P 		1974.6
(2.2)
P 		2074.2
(2.7)
P 		1257
B 1404.9
(-3)
P 		1467.4
(-2.7)
P 		1582.5
(-2.3)
P 		1789.2
(-1.4)
P 		2779.6
(2.6)
P 		2883.1
(3)
P 		1478
C 1525.6
(-2.5)
P 		1408.2
(-3)
P 		1807
(-1.2)
P 		1796.4
(-1.3)
P 		2306.3
(1)
P 		2764.5
(3)
P 		1356
avr 1271.2
(-3) 		1471.1
(-2.1) 		1629.6
(-1.3) 		1908.5
(-0.1) 		2353.5
(2) 		2573.9
(3) 		1303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12230
Sequence Type Exemplar sequence
Representative Public ID R01B10.1 NCBI
Target Description R01B10.1 /REP_DB=WormBase Gene ID /WP=CE25962 /TR=O61973 /GB=AAC17767.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072164 NCBI Caenorhabditis elegans Cystatin-LIke protease inhibitor family member (cli-1) (cli-1) mRNA, complete cds. 11/11 None
R01B10.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:6046654:6048265:1 gene:R01B10.1 11/11 None
R01B10.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:6046656:6048265:1 gene:R01B10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028891 3/11 Cross Hyb Matching Probes None
SNAP00000013412 3/11 Cross Hyb Matching Probes None
SNAP00000013414 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013431 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013432 3/11 Cross Hyb Matching Probes None
R01B10.1b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178992 2 1 NM_072164 186472_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6046697-6048133(+) 100.0 100.0
Public Domain and Genome References
Ensembl R01B10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17767 Cystatin-like protease inhibitor protein 1, isoform a [Caenorhabditis elegans] emb|CAC33822.1| cystatin C [Caenorhabditis elegans] ref|NP_504565.1| Cystatin-LIke protease inhibitor family member (cli-1) [Caenorhabditis elegans] 1.0E-76
blast CAE64523 Hypothetical protein CBG09261 [Caenorhabditis briggsae] 7.0E-61
blast BAB59011.1 nippocystatin [Nippostrongylus brasiliensis] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000010 EMBL-EBI Cysteine protease inhibitor 2.0E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504565.1 1 5-27
R01B10.1a.2 1 5-27
R01B10.1a.1 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186472_AT
tcgctctcattgccatttcgataatttctgtgaacgccggtatgatgactggaggatctg
ttgaacaagatgcatctcaaaaggagtattctgacaaagcctggaaggctgtgaaaggca
tcaacgatcaggcatccaacaacggaccttactactacgccccgattaaggtcacaaagg
cctcaacccaagttgtcgctggaatcagcaccaagctcgaggtgctcgtcggtgaatcga
actgcaagaagggagagttgcaggctcacgagatcacttcttccaactgccaaatcaagg
atggtggaagccgtgctctgtaccaagtcaccatctgggagaagccatgggagaacttcg
agcaattcactgtggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTCTCATTGCCATTTCGATAAT 124 601 32 Antisense
AGGCATCAACGATCAGGCATCCAAC 15 53 147 Antisense
GGCATCCAACAACGGACCTTACTAC 140 525 162 Antisense
CTACTACGCCCCGATTAAGGTCACA 168 225 183 Antisense
CAAAGGCCTCAACCCAAGTTGTCGC 40 191 206 Antisense
GCTGGAATCAGCACCAAGCTCGAGG 57 295 229 Antisense
GGTGCTCGTCGGTGAATCGAACTGC 9 501 252 Antisense
TTGCAGGCTCACGAGATCACTTCTT 53 703 289 Antisense
CAAGGATGGTGGAAGCCGTGCTCTG 105 183 327 Antisense
CTCTGTACCAAGTCACCATCTGGGA 482 231 347 Antisense
AACTTCGAGCAATTCACTGTGGAGA 118 139 385 Antisense
Sequence Source Affymetrix Proprietary Database