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[186470_at]

Description F16G10.1 /REP_DB=WormBase Gene ID /WP=CE19390 /TR=O76599 /GB=AAC26282.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 0.8
(-3)
A 		10.5
(-0.9)
A 		28.8
(3)
A 		10.2
(-1)
A 		28
B 14.2
(1.3)
A 		3.9
(-3)
A 		16.3
(2.1)
A 		18.4
(3)
A 		15
C 1.3
(-2.9)
A 		31
(2.1)
A 		0.9
(-3)
A 		36.2
(3)
A 		35
avr 5.4
(-3) 		15.1
(0.6) 		15.3
(0.7) 		21.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.1
(-1.2)
A 		1.2
(-3)
A 		25.6
(1.4)
A 		20.5
(0.4)
A 		19.4
(0.3)
A 		34.8
(3)
A 		34
B 1.2
(-2.3)
A 		2.7
(3)
A 		2.1
(0.9)
A 		1.1
(-2.6)
A 		2.3
(1.6)
A 		1
(-3)
A 		2
C 2.3
(-2.9)
A 		18
(-0.2)
A 		11.1
(-1.4)
A 		36.9
(3)
A 		14.7
(-0.8)
A 		1.6
(-3)
A 		35
avr 4.9
(-3) 		7.3
(-2) 		12.9
(0.3) 		19.5
(3) 		12.1
(-0) 		12.5
(0.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.3
(-3)
A 		2.3
(-1.3)
A 		7.5
(3)
A 		1.5
(-2)
A 		7
B 4.5
(3)
A 		1
(-3)
A 		3.8
(1.8)
A 		3.9
(2)
A 		4
C 0.4
(-2.9)
A 		8.9
(3)
A 		0.3
(-3)
A 		6.1
(1)
A 		9
avr 1.7
(-3) 		4.1
(3) 		3.9
(2.5) 		3.8
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2
(-1.8)
A 		0.4
(-3)
A 		5.6
(0.9)
A 		5.2
(0.6)
A 		5.9
(1.1)
A 		8.5
(3)
A 		8
B 0.4
(-2)
A 		0.9
(3)
A 		0.5
(-1)
A 		0.3
(-3)
A 		0.9
(3)
A 		0.4
(-2)
A 		1
C 0.8
(-2.7)
A 		5.5
(1.3)
A 		2.8
(-1)
A 		7.4
(3)
A 		4.7
(0.7)
A 		0.5
(-3)
A 		7
avr 1.1
(-3) 		2.3
(-0.8) 		3
(0.6) 		4.3
(3) 		3.8
(2.1) 		3.1
(0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5280
Sequence Type Exemplar sequence
Representative Public ID F16G10.1 NCBI
Target Description F16G10.1 /REP_DB=WormBase Gene ID /WP=CE19390 /TR=O76599 /GB=AAC26282.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061867 NCBI Caenorhabditis elegans F16G10.1 (F16G10.1) mRNA, complete cds. 11/11 None
F16G10.1 ENSEMBL cdna:known chromosome:CEL140:II:2401176:2404660:1 gene:F16G10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023127 2/11 Cross Hyb Matching Probes None
SNAP00000023128 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023140 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023141 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2401174-2404659(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.1
Entrez Gene 184576 Entrez gene
SwissProt O76599 EMBL-EBI
WormBase CE19390 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26282 Hypothetical protein F16G10.1 [Caenorhabditis elegans] ref|NP_494268.1| F16G10.1 [Caenorhabditis elegans] 8.0E-98
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 5.0E-52
blast AAC26281 Hypothetical protein F16G10.14 [Caenorhabditis elegans] ref|NP_494267.1| F16G10.14 [Caenorhabditis elegans] 9.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.9E-75
Sequence
Target Sequence 
>C. ELEGANS:186470_AT
ggctcctagagaaaccacgatggcttctggagagaacacagaggctcctgaaatgagcac
aatggctcctggagatatgtctacaccagagacctccgaggaaaccgaggcgcctgagct
aatttcaggagaagtatgcccaacatctacaaccaagtgtccagatttatcaacagtggt
taaggctccaatgatggtcggagagatgggtggatgcgctgttttctcttgtccccctgg
cttgttgccgtttattattggcgtttttgaagaaagcgaactgacagacgttgcagtacc
tggagtacctacatttggagcccagccaccatcgtcggtagcagatttgggtgtccggac
agtaattgattactttggtctcttttgtgaaaacaataaattgatggcctcgatatatcc
acgtggaattgctattggtttctctcttgtgggtgcagatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCTAGAGAAACCACGATGGCT 158 539 78 Antisense
TATGTCTACACCAGAGACCTCCGAG 111 657 153 Antisense
ACCGAGGCGCCTGAGCTAATTTCAG 501 89 181 Antisense
GAGATGGGTGGATGCGCTGTTTTCT 33 397 280 Antisense
GACAGACGTTGCAGTACCTGGAGTA 243 369 360 Antisense
TGGAGTACCTACATTTGGAGCCCAG 626 547 378 Antisense
AGCCACCATCGTCGGTAGCAGATTT 122 85 401 Antisense
GTAGCAGATTTGGGTGTCCGGACAG 6 457 415 Antisense
TGATTACTTTGGTCTCTTTTGTGAA 386 563 444 Antisense
GGAATTGCTATTGGTTTCTCTCTTG 684 533 502 Antisense
GTTTCTCTCTTGTGGGTGCAGATGG 277 451 515 Antisense
Sequence Source Affymetrix Proprietary Database