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[186468_s_at]

Description F49C12.12 /REP_DB=WormBase Gene ID /WP=CE03372 /TR=Q20589 /GB=CAA92515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 37      6grp_total > 22      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2224
1 2 3 4 range
A 5034.6
(-2.5)
P 		6768
(3)
P 		6208.1
(1.2)
P 		4862.3
(-3)
P 		1906
B 5732.2
(-0.1)
P 		6388.4
(2.3)
P 		6567.2
(3)
P 		4950.2
(-3)
P 		1617
C 5093.8
(-3)
P 		7086.2
(3)
P 		6187.1
(0.3)
P 		5937.3
(-0.5)
P 		1992
avr 5286.9
(-2.9) 		6747.5
(3) 		6320.8
(1.3) 		5249.9
(-3) 		1498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3652
1 2 3 4 5 6 range
A 5394.8
(2.3)
P 		5125
(1.7)
P 		5700.9
(3)
P 		4680
(0.7)
P 		4623.8
(0.6)
P 		3032.5
(-3)
P 		2668
B 6004.6
(1.5)
P 		5880
(1.2)
P 		6684.5
(3)
P 		4989.9
(-0.7)
P 		5772.3
(1)
P 		3943.8
(-3)
P 		2741
C 4638.7
(-1.2)
P 		6042.6
(3)
P 		4403.1
(-1.9)
P 		5530.7
(1.5)
P 		4055.2
(-3)
P 		4410.1
(-1.9)
P 		1987
avr 5346
(1.9) 		5682.5
(3) 		5596.2
(2.7) 		5066.9
(1) 		4817.1
(0.2) 		3795.5
(-3) 		1887
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1445
1 2 3 4 range
A 1833.1
(3)
P 		1469.2
(1.1)
P 		1622.9
(1.9)
P 		711.7
(-3)
P 		1121
B 1828
(3)
P 		1577.8
(1.1)
P 		1521.8
(0.6)
P 		1054.9
(-3)
P 		773
C 1686.2
(0.6)
P 		2037.3
(2.4)
P 		2156.4
(3)
P 		1001.1
(-3)
P 		1155
avr 1782.4
(3) 		1694.8
(2.4) 		1767
(2.9) 		922.6
(-3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1607
1 2 3 4 5 6 range
A 994.5
(-1.6)
P 		1822.7
(3)
P 		1241.5
(-0.2)
P 		1187
(-0.5)
P 		1395.3
(0.6)
P 		738.3
(-3)
P 		1084
B 2089.3
(1.5)
P 		1957.2
(0.7)
P 		1623.2
(-1.2)
P 		1321.6
(-3)
P 		2345.2
(3)
P 		1470.6
(-2.1)
P 		1024
C 1719.3
(2)
P 		1843.8
(3)
P 		1120.7
(-2.9)
P 		1112.2
(-3)
P 		1312.2
(-1.4)
P 		1476.3
(-0)
P 		732
avr 1601
(0.5) 		1874.6
(3) 		1328.5
(-1.9) 		1206.9
(-3) 		1684.2
(1.3) 		1228.4
(-2.8) 		668
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186468_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9229
Sequence Type Exemplar sequence
Representative Public ID F49C12.12 NCBI
Target Description F49C12.12 /REP_DB=WormBase Gene ID /WP=CE03372 /TR=Q20589 /GB=CAA92515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069234 NCBI Caenorhabditis elegans F49C12.12 (F49C12.12) mRNA, complete cds. 11/11 None
SNAP00000032700 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9320368:9321061:-1 11/11 None
GENEFINDER00000032713 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9320368:9321061:-1 11/11 None
F49C12.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:9320099:9321066:-1 gene:F49C12.12 11/11 None
F49C12.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:9320102:9321068:-1 gene:F49C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9320373-9321067(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.12
Entrez Gene 177755 Entrez gene
SwissProt Q20589 EMBL-EBI
WormBase CE03372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92515 Hypothetical protein F49C12.12 [Caenorhabditis elegans] ref|NP_501635.1| F49C12.12 [Caenorhabditis elegans] 4.0E-51
blast CAE74050 Hypothetical protein CBG21702 [Caenorhabditis briggsae] 3.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501635.1 2 20-42,66-85
F49C12.12.2 2 20-42,66-85
F49C12.12.1 2 20-42,66-85
SNAP00000032700 2 20-42,66-85
GENEFINDER00000032713 2 20-42,66-85
Sequence
Target Sequence 
>C. ELEGANS:186468_S_AT
atgggcaaaatctgtccgctgatgggaccaaaaatgtcggctttctgcatggtcatgtcg
gtgtggggagtaattttcctgggccttctcggtgttttcttctacattcaagccgtcact
ctcttcccagatcttcatttcgaaggacacggaaaggttccatcgagtgtaatcgacgca
aaatataacgagaaagcaacacaatgttggattgcagccggactctatgcagttactctt
attgcagtctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCAAAATCTGTCCGCTGATGG 453 49 13 Antisense
AAAATGTCGGCTTTCTGCATGGTCA 463 133 43 Antisense
TGCATGGTCATGTCGGTGTGGGGAG 361 577 58 Antisense
TGTGGGGAGTAATTTTCCTGGGCCT 377 555 74 Antisense
TTCTCGGTGTTTTCTTCTACATTCA 77 693 98 Antisense
TTTTCTTCTACATTCAAGCCGTCAC 607 675 107 Antisense
CTCTTCCCAGATCTTCATTTCGAAG 522 229 133 Antisense
GGTTCCATCGAGTGTAATCGACGCA 385 507 168 Antisense
AATGTTGGATTGCAGCCGGACTCTA 463 159 215 Antisense
TGCAGCCGGACTCTATGCAGTTACT 694 577 225 Antisense
GCAGTTACTCTTATTGCAGTCTTTT 208 313 241 Antisense
Sequence Source Affymetrix Proprietary Database