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[186467_at]

Description VC27A7L.1 /REP_DB=WormBase Gene ID /WP=CE14386 /TR=O01993 /GB=CAB09130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 39.1
(-3)
A 		45.4
(-2.9)
A 		74.6
(-2.4)
A 		403.1
(3)
P 		364
B 44.8
(-2.8)
A 		61.7
(-2.3)
A 		37.7
(-3)
A 		257
(3)
P 		219
C 69.1
(-2.1)
A 		77.5
(-1.9)
A 		29.6
(-3)
A 		296.6
(3)
P 		267
avr 51
(-2.9) 		61.5
(-2.7) 		47.3
(-3) 		318.9
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 100.2
(3)
A 		32.6
(-1.5)
A 		62.4
(0.5)
A 		11
(-3)
A 		77.3
(1.5)
A 		42.6
(-0.9)
A 		89
B 35
(-1.1)
A 		38.7
(-0.8)
A 		88
(3)
A 		10.6
(-3)
A 		37.6
(-0.9)
A 		52.1
(0.2)
A 		77
C 54.6
(-2.2)
A 		85.3
(3)
A 		49.6
(-3)
A 		79.1
(2)
A 		59
(-1.4)
A 		50.1
(-2.9)
A 		36
avr 63.3
(2.4) 		52.2
(0.4) 		66.7
(3) 		33.6
(-3) 		58
(1.4) 		48.3
(-0.3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 14.2
(-2.5)
A 		9.8
(-3)
A 		19.5
(-1.8)
A 		59
(3)
P 		49
B 14.3
(-2.3)
A 		15.2
(-2.2)
A 		8.7
(-3)
A 		54.8
(3)
P 		46
C 22.9
(-1.1)
A 		22.3
(-1.2)
A 		10.3
(-3)
A 		50
(3)
P 		40
avr 17.1
(-2.4) 		15.8
(-2.6) 		12.8
(-3) 		54.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 18.5
(1.6)
A 		11.6
(-0.4)
A 		13.6
(0.2)
A 		2.8
(-3)
A 		23.3
(3)
A 		10.4
(-0.8)
A 		21
B 12.2
(0)
A 		12.9
(0.3)
A 		21.4
(3)
A 		2.8
(-3)
A 		15.3
(1)
A 		19.4
(2.4)
A 		19
C 20.2
(0.4)
A 		26
(3)
A 		12.6
(-3)
A 		15.9
(-1.5)
A 		19.1
(-0.1)
A 		16.8
(-1.1)
A 		13
avr 17
(1.9) 		16.8
(1.8) 		15.9
(1.4) 		7.2
(-3) 		19.2
(3) 		15.5
(1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13138
Sequence Type Exemplar sequence
Representative Public ID VC27A7L.1 NCBI
Target Description VC27A7L.1 /REP_DB=WormBase Gene ID /WP=CE14386 /TR=O01993 /GB=CAB09130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073651 NCBI Caenorhabditis elegans VC27A7L.1 (VC27A7L.1) mRNA, complete cds. 11/11 None
SNAP00000039640 ENSEMBL cdna:SNAP chromosome:CEL140:V:12168235:12169250:1 11/11 None
GENEFINDER00000039641 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12168235:12169250:1 10/11 None
VC27A7L.1 ENSEMBL cdna:known chromosome:CEL140:V:12167800:12169250:1 gene:VC27A7L.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12167799-12169250(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl VC27A7L.1
Entrez Gene 189067 Entrez gene
SwissProt O01993 EMBL-EBI
WormBase CE14386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09130 Hypothetical protein VC27A7L.1 [Caenorhabditis elegans] ref|NP_506052.1| VC27A7L.1 [Caenorhabditis elegans] 0.0
blast CAB09130 Hypothetical protein VC27A7L.1 [Caenorhabditis elegans] ref|NP_506052.1| VC27A7L.1 [Caenorhabditis elegans] 1.0E-135
blast CAB09130 Hypothetical protein VC27A7L.1 [Caenorhabditis elegans] ref|NP_506052.1| VC27A7L.1 [Caenorhabditis elegans] 1.0E-133
blast CAE75406 Hypothetical protein CBG23396 [Caenorhabditis briggsae] 1.0E-125
blast CAE75405 Hypothetical protein CBG23395 [Caenorhabditis briggsae] 1.0E-121
blast CAE75406 Hypothetical protein CBG23396 [Caenorhabditis briggsae] 9.0E-98
blast CAE75406 Hypothetical protein CBG23396 [Caenorhabditis briggsae] 4.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506052.1 7 7-29,49-71,92-114,138-160,181-203,243-265,291-313
VC27A7L.1 7 7-29,49-71,92-114,138-160,181-203,243-265,291-313
SNAP00000039640 4 30-52,73-95,135-157,183-205
GENEFINDER00000039641 4 30-52,73-95,135-157,183-205
Sequence
Target Sequence 
>C. ELEGANS:186467_AT
tatcgttacgttgctatttgccgcccacaatggatttcttacttcacaaatcccaaatgt
attatcattcttattattggagtcttcgggcagggaattgtctggttctgttctgtttat
ttcttcatgtggtcagatgatgaaatgagatcttacttagagacaccattctatcgggat
tataattcagatgtttataaagtcccaatacttggaagtacttattggggtgcctccaca
aaactcatcgtatcaacaggaatcgttattatttccataatttcttgctggacaatatat
ttctgcttgtggactggttggacgattcattcgaagctgaaggtggtagatatgagcaaa
aatactaaaacaatgcacagaaatttgcttggtctgttccaatcatccattctcaacaat
ttcactgcagtcattgctgtggctgcattttcatttgtggatcctctagatatcatgttg
tttcttccggactataggaacgctctctacaaaatatttgttccatgtttgttcaagcca
gtcgcaatttatccagattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGTTACGTTGCTATTTGCCGCC 667 655 496 Antisense
ATTTGCCGCCCACAATGGATTTCTT 298 17 511 Antisense
GTCTGGTTCTGTTCTGTTTATTTCT 600 471 595 Antisense
GTACTTATTGGGGTGCCTCCACAAA 596 459 713 Antisense
GTGGACTGGTTGGACGATTCATTCG 419 489 804 Antisense
CTGTTCCAATCATCCATTCTCAACA 561 239 889 Antisense
TTCACTGCAGTCATTGCTGTGGCTG 376 687 916 Antisense
GCATTTTCATTTGTGGATCCTCTAG 420 307 940 Antisense
ATATCATGTTGTTTCTTCCGGACTA 215 21 965 Antisense
GTTCCATGTTTGTTCAAGCCAGTCG 276 441 1015 Antisense
GCCAGTCGCAATTTATCCAGATTCC 127 281 1032 Antisense
Sequence Source Affymetrix Proprietary Database