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[186466_s_at]

Description Y45F10C.3 /REP_DB=WormBase Gene ID /WP=CE16637 /TR=O62474 /GB=CAB16478.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 59.2
(-3)
A 		64.4
(-2.8)
A 		67.5
(-2.7)
A 		248.3
(3)
A 		189
B 94.7
(-2.3)
A 		84.4
(-3)
A 		108
(-1.4)
A 		170.9
(3)
A 		87
C 69.3
(-3)
A 		110.4
(-1.4)
A 		102.8
(-1.7)
A 		224.2
(3)
A 		155
avr 74.4
(-3) 		86.4
(-2.5) 		92.8
(-2.2) 		214.5
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1304
1 2 3 4 5 6 range
A 47.8
(-3)
A 		59
(-2.9)
A 		110.8
(-2.7)
M 		154.4
(-2.5)
P 		760.8
(0.5)
P 		1287
(3)
P 		1239
B 64.5
(-3)
A 		58.9
(-3)
A 		119
(-2.7)
A 		154
(-2.5)
P 		755.1
(0.9)
P 		1121.3
(3)
P 		1062
C 61.1
(-3)
A 		89.7
(-2.9)
A 		79.8
(-2.9)
A 		197.7
(-2.4)
P 		663.4
(-0.2)
P 		1352.2
(3)
P 		1291
avr 57.8
(-3) 		69.2
(-2.9) 		103.2
(-2.8) 		168.7
(-2.4) 		726.4
(0.4) 		1253.5
(3) 		1196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.5
(-1)
A 		14
(-3)
A 		17.6
(-2)
A 		36.3
(3)
A 		22
B 30.2
(0.6)
A 		20.8
(-3)
A 		25
(-1.4)
A 		36.4
(3)
A 		16
C 22.9
(-3)
A 		31.8
(0.6)
A 		35.8
(2.2)
A 		37.8
(3)
A 		15
avr 24.9
(-1.9) 		22.2
(-3) 		26.1
(-1.4) 		36.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 8.8
(-3)
A 		21
(-2.8)
A 		24.1
(-2.7)
M 		39.2
(-2.4)
P 		229.6
(1.4)
P 		313.3
(3)
P 		305
B 22.4
(-3)
A 		19.6
(-3)
A 		28.9
(-2.9)
A 		40.8
(-2.7)
P 		306.8
(1.3)
P 		418.1
(3)
P 		399
C 22.7
(-3)
A 		27.4
(-2.9)
A 		20.3
(-3)
A 		39.8
(-2.7)
P 		214.7
(-0.3)
P 		452.7
(3)
P 		432
avr 18
(-3) 		22.7
(-2.9) 		24.4
(-2.9) 		39.9
(-2.7) 		250.4
(0.7) 		394.7
(3) 		377
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186466_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8519
Sequence Type Exemplar sequence
Representative Public ID Y45F10C.3 NCBI
Target Description Y45F10C.3 /REP_DB=WormBase Gene ID /WP=CE16637 /TR=O62474 /GB=CAB16478.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070240 NCBI Caenorhabditis elegans Y45F10C.3 (Y45F10C.3) mRNA, complete cds. 11/11 None
SNAP00000031585 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13665459:13668887:-1 11/11 None
GENEFINDER00000031590 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13665459:13666838:-1 11/11 None
Y45F10C.3 ENSEMBL cdna:known chromosome:CEL140:IV:13665366:13666838:-1 gene:Y45F10C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13665464-13666844(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10C.3
Entrez Gene 178336 Entrez gene
SwissProt O62474 EMBL-EBI
WormBase CE16637 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16478 Hypothetical protein Y45F10C.3 [Caenorhabditis elegans] ref|NP_502641.1| Y45F10C.3 [Caenorhabditis elegans] 0.0
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 5.0E-40
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.2E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.2E-11
Sequence
Target Sequence 
>C. ELEGANS:186466_S_AT
atgctctgacggaagccattcaattgatgagaaattcaaataatcacagcaaagagttcc
acgtgagagcagaacgatcaaacgatcaggaattgtcaatggttctcaggaaatttttcg
attctgtggaaattgagctttatgcgaagaaaattgtcgtcagtggattcagttttgccg
atacatcttcggttctttgccatttcaaagcgggatttctcgaggaaattcaggtgttac
cgggttccggtggcccgtggaccaacgtactcgtcgaaatggaacaatacaagaaggcaa
aagtattgaagatttgcacggaatttccagttttactggatatcgaggatttgctgcatt
tccgacggttcgaaattgcgataaaatcagatttcactgaaagaatggccagaaaaattc
gcgatgttctcaccaattctgaacatttcgaatatgcccacataataactcaagatcttc
accatcggacagtcattaaattcttcaatcgaaatgctgaaaatgtattctggaattatg
gatccatgaattataataacaagaagcgcctcttccacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTGACGGAAGCCATTCAATT 1 43 566 Antisense
GCAAAGAGTTCCACGTGAGAGCAGA 148 319 614 Antisense
AAATTGTCGTCAGTGGATTCAGTTT 225 115 716 Antisense
GATTCAGTTTTGCCGATACATCTTC 213 431 731 Antisense
ATACATCTTCGGTTCTTTGCCATTT 162 25 746 Antisense
GCCATTTCAAAGCGGGATTTCTCGA 220 281 764 Antisense
GTGGACCAACGTACTCGTCGAAATG 333 489 822 Antisense
TTTGCTGCATTTCCGACGGTTCGAA 341 669 915 Antisense
TTCTCACCAATTCTGAACATTTCGA 591 691 992 Antisense
AGATCTTCACCATCGGACAGTCATT 209 65 1038 Antisense
TAACAAGAAGCGCCTCTTCCACATT 273 639 1122 Antisense
Sequence Source Affymetrix Proprietary Database