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[186465_at]

Description Y71A12C.2 /REP_DB=WormBase Gene ID /WP=CE26242 /TR=Q9XXB4 /GB=CAA19559.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 38.7
(-3)
A 		90.8
(2.9)
A 		67.5
(0.3)
A 		91.8
(3)
A 		53
B 58.2
(-3)
A 		65
(-2)
A 		77.2
(-0.2)
A 		99.2
(3)
A 		41
C 28.5
(-3)
A 		109.3
(3)
A 		36.7
(-2.4)
A 		64.6
(-0.3)
A 		81
avr 41.8
(-3) 		88.4
(3) 		60.5
(-0.6) 		85.2
(2.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 51.2
(-0.1)
A 		29.9
(-3)
A 		49.3
(-0.4)
A 		29.7
(-3)
A 		74.4
(3)
A 		70.2
(2.4)
A 		45
B 67.3
(-0.2)
A 		92.2
(3)
A 		54.7
(-1.8)
A 		45.5
(-3)
A 		75.4
(0.8)
A 		83.4
(1.9)
A 		47
C 45.3
(-2)
A 		68.8
(0.9)
A 		42.5
(-2.4)
A 		71.3
(1.2)
A 		37.4
(-3)
A 		85.5
(3)
A 		48
avr 54.6
(-1.9) 		63.6
(-0.1) 		48.8
(-3) 		48.8
(-3) 		62.4
(-0.4) 		79.7
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.1
(-2.3)
A 		19.7
(3)
A 		17.6
(1)
A 		13.4
(-3)
A 		6
B 18.5
(-0.1)
A 		16.1
(-3)
A 		17.9
(-0.8)
A 		21.1
(3)
A 		5
C 9.4
(-3)
A 		31.4
(3)
A 		12.8
(-2.1)
A 		10.9
(-2.6)
A 		22
avr 14
(-3) 		22.4
(3) 		16.1
(-1.5) 		15.1
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.4
(-2.2)
A 		10.6
(-1.8)
A 		10.7
(-1.7)
A 		7.5
(-3)
A 		22.4
(3)
A 		17.1
(0.9)
A 		15
B 23.4
(0.6)
A 		30.7
(2.9)
A 		13.3
(-2.6)
A 		12.1
(-3)
A 		30.6
(2.8)
A 		31.1
(3)
A 		19
C 16.8
(-1)
A 		21
(0.4)
A 		10.8
(-3)
A 		14.3
(-1.8)
A 		12.1
(-2.6)
A 		28.6
(3)
A 		18
avr 16.5
(-0.8) 		20.8
(1) 		11.6
(-2.9) 		11.3
(-3) 		21.7
(1.4) 		25.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1675
Sequence Type Exemplar sequence
Representative Public ID Y71A12C.2 NCBI
Target Description Y71A12C.2 /REP_DB=WormBase Gene ID /WP=CE26242 /TR=Q9XXB4 /GB=CAA19559.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061046 NCBI Caenorhabditis elegans Y71A12C.2 (Y71A12C.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010878 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14051649:14056135:-1 11/11 None
SNAP00000010875 ENSEMBL cdna:SNAP chromosome:CEL140:I:14054359:14056135:-1 10/11 None
Y71A12C.2 ENSEMBL cdna:known chromosome:CEL140:I:14054359:14056135:-1 gene:Y71A12C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14054289-14056066(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12C.2
Entrez Gene 190582 Entrez gene
SwissProt Q9XXB4 EMBL-EBI
WormBase CE26242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19559 Hypothetical protein Y71A12C.2 [Caenorhabditis elegans] ref|NP_493447.1| Y71A12C.2 [Caenorhabditis elegans] 1.0E-143
blast CAA19559 Hypothetical protein Y71A12C.2 [Caenorhabditis elegans] ref|NP_493447.1| Y71A12C.2 [Caenorhabditis elegans] 1.0E-141
blast CAA19559 Hypothetical protein Y71A12C.2 [Caenorhabditis elegans] ref|NP_493447.1| Y71A12C.2 [Caenorhabditis elegans] 1.0E-130
blast CAE71825 Hypothetical protein CBG18864 [Caenorhabditis briggsae] 1.0E-109
blast CAE71825 Hypothetical protein CBG18864 [Caenorhabditis briggsae] 1.0E-105
blast CAE71825 Hypothetical protein CBG18864 [Caenorhabditis briggsae] 1.0E-103
blast XP_422688 PREDICTED: similar to hypothetical protein MGC15397 [Gallus gallus] 1.0E-45
blast NP_079969 transmembrane protein 41a [Mus musculus] dbj|BAB25189.1| unnamed protein product [Mus musculus] gb|AAH19770.1| Transmembrane protein 41a [Mus musculus] 9.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493447.1 3 7-26,92-111,118-140
Y71A12C.2 3 7-26,92-111,118-140
GENEFINDER00000010878 3 7-26,92-111,118-140
SNAP00000010875 3 7-26,75-94,101-123
Sequence
Target Sequence 
>C. ELEGANS:186465_AT
cgcaacgcatcctcatttttcagagaatcccatgccgcctacacagtacttctcttctca
gcagcttacctctacaagcagacttttgcgattcccggatcatttttcatgaatcttcta
gctggagcactttttggcacagttcgtggagttgcactggtttgcagccttaacgcagtt
ggagcatctttatgcttctgcctatcggctctttttgcagcaccaattgtcgaccggttt
ttgaagtcaagaattgaaagtttgcggtgtttggtaaacgccgaacgtgaccgcctctgg
tttttcctattgtctgccagaatcttcccattcactcctcattggttgctgaacatctcc
agtccatttttggatgtacctttgagatatcacgccagctcggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCAACGCATCCTCATTTTTCAGAG 429 253 202 Antisense
CTTCTCAGCAGCTTACCTCTACAAG 158 221 255 Antisense
GACTTTTGCGATTCCCGGATCATTT 156 373 282 Antisense
TGGAGCACTTTTTGGCACAGTTCGT 195 549 324 Antisense
GCAGCCTTAACGCAGTTGGAGCATC 481 313 365 Antisense
GGAGCATCTTTATGCTTCTGCCTAT 253 521 382 Antisense
GGCTCTTTTTGCAGCACCAATTGTC 192 539 408 Antisense
CTCTGGTTTTTCCTATTGTCTGCCA 636 231 496 Antisense
CATTCACTCCTCATTGGTTGCTGAA 80 217 530 Antisense
GCTGAACATCTCCAGTCCATTTTTG 487 295 549 Antisense
TTGAGATATCACGCCAGCTCGGTTT 147 707 583 Antisense
Sequence Source Affymetrix Proprietary Database