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[186464_s_at]

Description Y46G5A.21 /REP_DB=WormBase Gene ID /WP=CE24294 /TR=Q9U2E8 /GB=CAB60363.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 50      6grp_total > 24      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 634
1 2 3 4 range
A 869.6
(3)
P 		561
(-0)
P 		703.7
(1.4)
P 		257.3
(-3)
P 		612
B 764.6
(3)
P 		741.2
(2.7)
P 		762.5
(3)
P 		261.9
(-3)
P 		503
C 793.3
(3)
P 		692.9
(1.9)
P 		673.7
(1.7)
P 		235.7
(-3)
P 		558
avr 809.2
(3) 		665
(1.4) 		713.3
(2) 		251.6
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 517.6
(0.1)
P 		696.7
(3)
P 		461.9
(-0.8)
P 		402.1
(-1.8)
P 		359
(-2.5)
P 		326.1
(-3)
P 		371
B 772.1
(3)
P 		578.2
(0.8)
P 		532
(0.3)
P 		383.7
(-1.3)
P 		338.8
(-1.8)
P 		233.6
(-3)
P 		539
C 615
(3)
P 		569.7
(2.2)
P 		564.1
(2.1)
P 		359.1
(-1.3)
P 		405.2
(-0.5)
P 		260.3
(-3)
P 		355
avr 634.9
(3) 		614.9
(2.7) 		519.3
(1.1) 		381.6
(-1.2) 		367.7
(-1.4) 		273.3
(-3) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 316.6
(3)
P 		121.8
(-1.2)
P 		184
(0.1)
P 		37.7
(-3)
P 		279
B 243.8
(3)
P 		183
(1.1)
P 		176.7
(0.9)
P 		55.8
(-3)
P 		188
C 262.6
(3)
P 		199.2
(1.3)
P 		234.8
(2.3)
P 		39.7
(-3)
P 		223
avr 274.3
(3) 		168
(0.2) 		198.5
(1) 		44.4
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 95.4
(-2.4)
P 		247.8
(3)
P 		100.6
(-2.2)
P 		102
(-2.2)
P 		108.3
(-2)
P 		79.4
(-3)
P 		168
B 268.6
(3)
P 		192.5
(0.5)
P 		129.2
(-1.6)
P 		101.6
(-2.5)
P 		137.7
(-1.3)
P 		87.1
(-3)
P 		182
C 227.9
(3)
P 		173.8
(0.9)
P 		143.6
(-0.2)
P 		72.2
(-3)
P 		131.1
(-0.7)
P 		87.1
(-2.4)
P 		156
avr 197.3
(2.6) 		204.7
(3) 		124.5
(-1) 		91.9
(-2.6) 		125.7
(-0.9) 		84.5
(-3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3201
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.21 NCBI
Target Description Y46G5A.21 /REP_DB=WormBase Gene ID /WP=CE24294 /TR=Q9U2E8 /GB=CAB60363.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064324(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064324 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-7) (acl-7) mRNA, complete cds. 10/11 None
SNAP00000039000 ENSEMBL cdna:SNAP chromosome:CEL140:II:12811817:12815981:-1 10/11 None
GENEFINDER00000039023 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12811817:12816355:-1 10/11 None
Y46G5A.21 ENSEMBL cdna:known chromosome:CEL140:II:12811804:12816360:-1 gene:Y46G5A.21 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12811813-12816352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-7
Ensembl Y46G5A.21
Entrez Gene 174916 Entrez gene
SwissProt Q9U2E8 EMBL-EBI
WormBase CE31115 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20752.1.S1_S_AT similar to Dihydroxyacetone phosphate acyltransferase (DHAP-AT) (DAP-AT) (Glycerone-phosphate O-acyltransferase) (Acyl-CoA:dihydroxyacetonephosphateacyltransferase) cfa
CANINE_2:CFAAFFX.18395.1.S1_AT similar to Dihydroxyacetone phosphate acyltransferase (DHAP-AT) (DAP-AT) (Glycerone-phosphate O-acyltransferase) (Acyl-CoA:dihydroxyacetonephosphateacyltransferase) cfa
DROSOPHILA_2:1632807_AT Dihydroxyacetone phosphate acyltransferase dm
DROSGENOME1:150592_AT Dihydroxyacetone phosphate acyltransferase dm
HU35KSUBA:RC_AA600134_AT glyceronephosphate O-acyltransferase hs
HU35KSUBC:RC_W73134_AT glyceronephosphate O-acyltransferase hs
HU35KSUBC:RC_W72079_AT glyceronephosphate O-acyltransferase hs
HG-U133A:201956_S_AT glyceronephosphate O-acyltransferase hs
HG-U133_PLUS_2:201956_S_AT glyceronephosphate O-acyltransferase hs
HG-FOCUS:201956_S_AT glyceronephosphate O-acyltransferase hs
HG-U133A_2:201956_S_AT glyceronephosphate O-acyltransferase hs
U133_X3P:G7657133_3P_A_AT glyceronephosphate O-acyltransferase hs
HG-U95AV2:39392_AT glyceronephosphate O-acyltransferase hs
HG-U133_PLUS_2:240803_AT Glyceronephosphate O-acyltransferase hs
HG-U133B:240803_AT Glyceronephosphate O-acyltransferase hs
HG-U95C:61569_AT Glyceronephosphate O-acyltransferase hs
U133_X3P:HS.144899.0.A1_3P_AT Glyceronephosphate O-acyltransferase hs
MG-U74AV2:94562_AT glyceronephosphate O-acyltransferase mm
MOE430A:1417456_AT glyceronephosphate O-acyltransferase mm
MOUSE430A_2:1417456_AT glyceronephosphate O-acyltransferase mm
MOUSE430_2:1417456_AT glyceronephosphate O-acyltransferase mm
MU19KSUBA:TC15219_AT Glyceronephosphate O-acyltransferase, mRNA (cDNA clone MGC:13727 IMAGE:4020505) mm
MU19KSUBB:TC31834_AT Glyceronephosphate O-acyltransferase, mRNA (cDNA clone MGC:13727 IMAGE:4020505) mm
MU19KSUBB:TC31834_G_AT Glyceronephosphate O-acyltransferase, mRNA (cDNA clone MGC:13727 IMAGE:4020505) mm
RG-U34A:RC_AA799779_AT glyceronephosphate O-acyltransferase rn
RG-U34C:RC_AA819663_AT glyceronephosphate O-acyltransferase rn
RAE230A:1368890_AT glyceronephosphate O-acyltransferase rn
RAT230_2:1368890_AT glyceronephosphate O-acyltransferase rn
RG-U34A:RC_AA799779_G_AT Glyceronephosphate O-acyltransferase rn
RG-U34B:RC_AI014001_AT Glyceronephosphate O-acyltransferase rn
RAE230A:1368891_AT Glyceronephosphate O-acyltransferase rn
RAT230_2:1368891_AT Glyceronephosphate O-acyltransferase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60363 Hypothetical protein Y46G5A.21 [Caenorhabditis elegans] ref|NP_496725.2| ACyLtransferase-like family member (acl-7) [Caenorhabditis elegans] emb|CAC92449.1| dihydroxyacetone phosphate acyltransferase [Caenorhabditis elegans] 0.0
blast CAE71501 Hypothetical protein CBG18430 [Caenorhabditis briggsae] 0.0
blast NP_445862 glyceronephosphate O-acyltransferase [Rattus norvegicus] gb|AAG17548.1| acyl-CoA:dihydroxyacetonephosphate acyltransferase [Rattus norvegicus] sp|Q9ES71|GNPAT_RAT Dihydroxyacetone phosphate acyltransferase (DHAP-AT) (DAP-AT) (Glycerone-phosphate O-acyltransferase) (Acyl-CoA:dihydroxyacetonephosphateacyltransferase) 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.5E-18
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.5E-18
Sequence
Target Sequence 
>C. ELEGANS:186464_S_AT
cggagagccaatttccgtccgagaccatttcggtgtcagccttcaccggaatacgtttgt
ctgtcagccagactcacaatttgtgctcgacgcgcaggcgaagctggagatcaaaagctg
gctccatttcctaatgaaacgagagtttgtgacggttcccggagagcttccccaactatt
tgacgcaactctcgatattctgagagcttctgaaatcttgcaattcaccgatgataataa
aatcgaaatcctagacgagaaaaatgcagaagtgttgagcaagcttgtgctcccatattt
ttataattttgagatagcgtttaacgtgttttccgagaagaagccaatggtttccagttt
atcagagatggtgggaactgtgcagaagaatattagtgaagcatatcaagatcgcttacc
caacatccgactatcattcctatcaactgagcctatcaaaaatgcattcgccgcactgac
ggattttggagtatttgagaactcgaacaccggaatgcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAGAGCCAATTTCCGTCCGAGAC 478 243 954 Antisense
GTCCGAGACCATTTCGGTGTCAGCC 98 477 970 Antisense
ACCGGAATACGTTTGTCTGTCAGCC 665 87 998 Antisense
AAAAGCTGGCTCCATTTCCTAATGA 256 131 1066 Antisense
TTGTGACGGTTCCCGGAGAGCTTCC 393 707 1100 Antisense
CTTCCCCAACTATTTGACGCAACTC 505 219 1120 Antisense
CAAGCTTGTGCTCCCATATTTTTAT 560 185 1233 Antisense
TCAAGATCGCTTACCCAACATCCGA 607 631 1359 Antisense
CATCCGACTATCATTCCTATCAACT 650 211 1377 Antisense
GCATTCGCCGCACTGACGGATTTTG 265 307 1417 Antisense
GAGAACTCGAACACCGGAATGCGGC 637 391 1450 Antisense
Sequence Source Affymetrix Proprietary Database