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[186463_at]

Description D1007.14 /REP_DB=WormBase Gene ID /WP=CE09049 /TR=O01876 /GB=AAK18919.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 81      6grp_total > 54      4grp_total > 47      6grp_cgc > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 301
(3)
P 		169.8
(-2.5)
P 		157.9
(-3)
P 		236.5
(0.3)
P 		143
B 391.5
(3)
P 		216.3
(-1.4)
P 		209.8
(-1.6)
P 		154.8
(-3)
P 		237
C 384.7
(3)
P 		207
(-3)
P 		241
(-1.9)
P 		238.2
(-1.9)
P 		178
avr 359.1
(3) 		197.7
(-3) 		202.9
(-2.8) 		209.8
(-2.6) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 265.4
(-2.4)
P 		283.7
(-1.7)
P 		413.6
(3)
P 		324.4
(-0.2)
P 		248.6
(-3)
P 		267.8
(-2.3)
P 		165
B 277.1
(-0.6)
P 		231.5
(-3)
P 		346.5
(3)
P 		237.2
(-2.7)
P 		261.9
(-1.4)
P 		303.8
(0.8)
P 		115
C 309.2
(-1.5)
P 		309.2
(-1.5)
P 		365.4
(1.1)
P 		283.9
(-2.6)
P 		275.1
(-3)
P 		408.8
(3)
P 		134
avr 283.9
(-1.8) 		274.8
(-2.3) 		375.2
(3) 		281.8
(-1.9) 		261.9
(-3) 		326.8
(0.4) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 109.6
(3)
P 		36.9
(-2.8)
P 		41.3
(-2.5)
P 		34.6
(-3)
P 		75
B 124.8
(3)
P 		53.4
(-1.7)
P 		48.6
(-2)
P 		33
(-3)
P 		92
C 127.3
(3)
P 		59.5
(-1.7)
P 		84
(0)
P 		40.2
(-3)
P 		87
avr 120.6
(3) 		49.9
(-2) 		58
(-1.4) 		35.9
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 48.9
(-3)
P 		100.9
(3)
P 		90.1
(1.8)
P 		82.3
(0.9)
P 		75
(0)
P 		65.2
(-1.1)
P 		52
B 96.4
(1)
P 		77.1
(-1.3)
P 		84.1
(-0.5)
P 		62.8
(-3)
P 		106.4
(2.2)
P 		113.3
(3)
P 		51
C 114.6
(1.3)
P 		94.4
(-0.2)
P 		93
(-0.3)
P 		57.1
(-3)
P 		89
(-0.6)
P 		136.8
(3)
P 		80
avr 86.6
(0.1) 		90.8
(0.7) 		89.1
(0.5) 		67.4
(-3) 		90.1
(0.6) 		105.1
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.939
Sequence Type Exemplar sequence
Representative Public ID D1007.14 NCBI
Target Description D1007.14 /REP_DB=WormBase Gene ID /WP=CE09049 /TR=O01876 /GB=AAK18919.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058990(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058990 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-24) (pqn-24) mRNA, complete cds. 9/11 None
GENEFINDER00000011309 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4557692:4566112:1 9/11 None
SNAP00000011274 ENSEMBL cdna:SNAP chromosome:CEL140:I:4564141:4565925:1 9/11 None
D1007.14 ENSEMBL cdna:known chromosome:CEL140:I:4564381:4565925:1 gene:D1007.14 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4564380-4565925(+) 95.01 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-24
Ensembl D1007.14
Entrez Gene 183891 Entrez gene
WormBase CE39094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18921 Hypothetical protein D1007.15 [Caenorhabditis elegans] ref|NP_491390.2| D1007.15 [Caenorhabditis elegans] 0.0
blast CAE74500 Hypothetical protein CBG22251 [Caenorhabditis briggsae] 0.0
blast E87759 protein D1007.15 [imported] - Caenorhabditis elegans 0.0
blast AAK18919 Prion-like-(q/n-rich)-domain-bearing protein protein 24 [Caenorhabditis elegans] 1.0E-116
blast NP_491391 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-24) [Caenorhabditis elegans] 3.0E-85
blast AAK18919 Prion-like-(q/n-rich)-domain-bearing protein protein 24 [Caenorhabditis elegans] 3.0E-85
blast NP_491391 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-24) [Caenorhabditis elegans] 5.0E-85
blast CAE74502 Hypothetical protein CBG22253 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011309 10 60-77,81-103,254-276,291-313,939-961,971-990,1019-1041,1089-1111,1118-1137,1147-1169
Sequence
Target Sequence 
>C. ELEGANS:186463_AT
gaaggctggatgttcgagatggagcccgaaacaaatccaaaatggtggtggaaacagtgg
caactggaacagcggaggaaacaataatggagcaagcggaggatcgtggggaaatgggaa
tgctaataataataataataataataatggtggatcgaataacaatggatggggaaataa
taatgactggagcagcaactacaactatggaggctcaaatgcagccaacgagccaaaaat
gacaaaacaaacagttgctggagatgattcatggaacaaaaacaaatggacaaacaaaca
agtcgaggatatgttcaaaaaatccattgatgatcgtggggacgagatccaactggaaga
tgatttcaagaaaatcgataaaaattacaagacacaatcagttcctcaggagtcattgag
aacactttccgcgcggaaggaagtcgagaaaattccatttgtagctggaaaaagctcagg
agttggagcaaagaccacagccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCTGGATGTTCGAGATGGAGC 599 333 33 Antisense
GAGCCCGAAACAAATCCAAAATGGT 608 383 54 Antisense
CAGTGGCAACTGGAACAGCGGAGGA 265 207 87 Antisense
GGAGCAAGCGGAGGATCGTGGGGAA 303 519 121 Antisense
GCAACTACAACTATGGAGGCTCAAA 520 317 227 Antisense
GGAGGCTCAAATGCAGCCAACGAGC 592 515 241 Antisense
ATCGTGGGGACGAGATCCAACTGGA 86 3 365 Antisense
AAGACACAATCAGTTCCTCAGGAGT 225 153 421 Antisense
GAGTCATTGAGAACACTTTCCGCGC 438 399 442 Antisense
CTTTCCGCGCGGAAGGAAGTCGAGA 696 211 457 Antisense
GTTGGAGCAAAGACCACAGCCAGTC 197 435 514 Antisense
Sequence Source Affymetrix Proprietary Database