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[186462_at]

Description Y46G5A.10 /REP_DB=WormBase Gene ID /WP=CE24288 /TR=Q9U2D6 /GB=CAB60376.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 47      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 75.9
(3)
A 		18.3
(-2.1)
A 		26.9
(-1.3)
A 		7.5
(-3)
A 		68
B 75.7
(3)
A 		41.5
(0)
A 		6.9
(-3)
A 		22
(-1.7)
A 		69
C 124.4
(3)
A 		13.7
(-2.7)
A 		13.7
(-2.7)
A 		7
(-3)
A 		117
avr 92
(3) 		24.5
(-2.1) 		15.8
(-2.7) 		12.2
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 14.6
(-2.6)
A 		41.3
(-1.4)
A 		6.6
(-3)
A 		87.7
(0.8)
A 		134.4
(3)
A 		90.5
(0.9)
A 		128
B 23.1
(-2.3)
A 		9.4
(-2.8)
A 		5.3
(-3)
A 		9
(-2.9)
A 		167.5
(3)
A 		108.9
(0.8)
A 		162
C 16.7
(-2.7)
A 		6.2
(-3)
A 		16.6
(-2.7)
A 		77.9
(-0.9)
A 		211.2
(3)
A 		102.6
(-0.2)
A 		205
avr 18.1
(-2.7) 		19
(-2.6) 		9.5
(-3) 		58.2
(-1.2) 		171
(3) 		100.7
(0.4) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 27.6
(3)
A 		4
(-2.3)
A 		7
(-1.7)
A 		1.1
(-3)
A 		27
B 24.1
(3)
A 		10.2
(-0.7)
A 		1.6
(-3)
A 		4.7
(-2.2)
A 		23
C 41.2
(3)
A 		3.9
(-2.6)
A 		4.8
(-2.5)
A 		1.2
(-3)
A 		40
avr 31
(3) 		6
(-2.2) 		4.5
(-2.5) 		2.3
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 2.7
(-2.8)
A 		14.7
(-1)
A 		1.4
(-3)
A 		22.2
(0.2)
A 		40.6
(3)
A 		22
(0.2)
A 		39
B 8
(-2.4)
A 		3.1
(-2.8)
A 		1.3
(-3)
A 		2.4
(-2.9)
A 		68.1
(3)
A 		40.6
(0.5)
A 		67
C 6.2
(-2.6)
A 		1.9
(-3)
A 		4.2
(-2.8)
A 		15.7
(-1.8)
A 		68.3
(3)
A 		34.3
(-0.1)
A 		66
avr 5.6
(-2.7) 		6.6
(-2.5) 		2.3
(-3) 		13.4
(-1.8) 		59
(3) 		32.3
(0.2) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2971
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.10 NCBI
Target Description Y46G5A.10 /REP_DB=WormBase Gene ID /WP=CE24288 /TR=Q9U2D6 /GB=CAB60376.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064314 NCBI Caenorhabditis elegans Y46G5A.10 (Y46G5A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000039021 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12756249:12767045:1 10/11 None
Y46G5A.10 ENSEMBL cdna:known chromosome:CEL140:II:12760693:12767114:1 gene:Y46G5A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12760713-12762648(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.10
Entrez Gene 174907 Entrez gene
SwissProt Q9U2D6 EMBL-EBI
WormBase CE37941 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60376 Hypothetical protein Y46G5A.10 [Caenorhabditis elegans] ref|NP_496715.3| Y46G5A.10 [Caenorhabditis elegans] 0.0
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 1.0E-163
blast CAB60353 Hypothetical protein Y46G5A.8 [Caenorhabditis elegans] ref|NP_496714.1| Y46G5A.8 [Caenorhabditis elegans] 5.0E-81
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 8.0E-81
blast CAE63560 Hypothetical protein CBG08047 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-9
Sequence
Target Sequence 
>C. ELEGANS:186462_AT
taaccgatcccgatctacatcatctagacccctggatcgagagccctaccatgctgtatc
agagctgtacaccaaggaaataacccatactccaattggtccagcttcagaccttcctcc
agaaattttggatattcttaaagaaaatccccgagcaacaccacagtatacacctccgtt
gattaggcaccgcgaaaacacatggaccccagaaaactacccaattgttcgtgtcccttc
tgcacaattcacagatgttatgactgaactgtacgactatcacgaagtagagaaatacac
acaccgatcggtcaccccagactacgagccactacggaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCGATCCCGATCTACATCATCT 675 637 36 Antisense
TCATCTAGACCCCTGGATCGAGAGC 144 621 55 Antisense
AGCCCTACCATGCTGTATCAGAGCT 174 83 77 Antisense
AACCCATACTCCAATTGGTCCAGCT 263 147 117 Antisense
GAGCAACACCACAGTATACACCTCC 316 391 188 Antisense
ATACACCTCCGTTGATTAGGCACCG 250 25 203 Antisense
AGGCACCGCGAAAACACATGGACCC 35 55 220 Antisense
CATGGACCCCAGAAAACTACCCAAT 328 209 236 Antisense
TGTCCCTTCTGCACAATTCACAGAT 484 557 267 Antisense
GAGAAATACACACACCGATCGGTCA 143 391 325 Antisense
CCAGACTACGAGCCACTACGGAAAG 66 271 352 Antisense
Sequence Source Affymetrix Proprietary Database