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[186461_at]

Description C17D12.1A /REP_DB=WormBase Gene ID /WP=CE19697 /TR=Q9U3P7 /GB=CAB03897.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 22      6grp_total > 02      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 82.1
(-3)
P 		98.5
(-1.5)
P 		92.8
(-2)
A 		146
(3)
A 		64
B 78.7
(-3)
M 		81.1
(-2.4)
A 		94
(0.5)
P 		104.8
(3)
P 		26
C 61.1
(-3)
A 		80.2
(-1.4)
A 		61.8
(-2.9)
A 		130.9
(3)
P 		70
avr 74
(-3) 		86.6
(-1.6) 		82.9
(-2) 		127.2
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 171.3
(3)
P 		79.4
(-3)
P 		157.1
(2.1)
P 		100.1
(-1.6)
P 		150.6
(1.7)
P 		79.1
(-3)
M 		92
B 165.4
(1.7)
P 		184.3
(3)
P 		127.7
(-0.9)
P 		148.8
(0.6)
A 		139.6
(-0.1)
P 		96.9
(-3)
P 		87
C 63.5
(-3)
A 		220.7
(3)
P 		104.7
(-1.4)
P 		175.4
(1.3)
P 		114.9
(-1)
P 		114.2
(-1.1)
P 		157
avr 133.4
(0.4) 		161.5
(3) 		129.8
(0.1) 		141.4
(1.1) 		135
(0.5) 		96.7
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 29.9
(3)
P 		21.4
(-3)
P 		24.3
(-1)
A 		21.4
(-3)
A 		9
B 25.1
(3)
M 		20
(-3)
A 		21.8
(-0.9)
P 		22.3
(-0.3)
P 		5
C 20.2
(-3)
A 		23.1
(3)
A 		21.6
(-0.1)
A 		22.1
(0.9)
P 		3
avr 25.1
(3) 		21.5
(-3) 		22.6
(-1.2) 		21.9
(-2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 31.6
(-0.2)
P 		28.2
(-0.9)
P 		34.2
(0.4)
P 		25.4
(-1.6)
P 		45.5
(3)
P 		19.2
(-3)
M 		26
B 57.6
(2.3)
P 		61.4
(3)
P 		31
(-3)
P 		39.4
(-1.3)
A 		56.7
(2.1)
P 		36.1
(-2)
P 		30
C 23.5
(-3)
A 		67.3
(3)
P 		26.7
(-2.6)
P 		35.3
(-1.4)
P 		37.2
(-1.1)
P 		38.2
(-1)
P 		44
avr 37.6
(-1.1) 		52.3
(3) 		30.6
(-3) 		33.4
(-2.2) 		46.5
(1.4) 		31.2
(-2.8) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1628
Sequence Type Exemplar sequence
Representative Public ID C17D12.1A NCBI
Target Description C17D12.1A /REP_DB=WormBase Gene ID /WP=CE19697 /TR=Q9U3P7 /GB=CAB03897.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060559(11), NM_060560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060559 NCBI Caenorhabditis elegans C17D12.1a (C17D12.1) mRNA, complete cds. 11/11 None
NM_060560 NCBI Caenorhabditis elegans C17D12.1b (C17D12.1) mRNA, complete cds. 11/11 None
SNAP00000011114 ENSEMBL cdna:SNAP chromosome:CEL140:I:11606983:11624261:1 11/11 None
GENEFINDER00000011119 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11619828:11624261:1 11/11 None
C17D12.1a ENSEMBL cdna:known chromosome:CEL140:I:11619794:11624261:1 gene:C17D12.1 11/11 None
C17D12.1b ENSEMBL cdna:known chromosome:CEL140:I:11619810:11624261:1 gene:C17D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11619758-11624192(+) 100.0 100.0
Public Domain and Genome References
Ensembl C17D12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03897 Hypothetical protein C17D12.1a [Caenorhabditis elegans] ref|NP_492960.1| C17D12.1a [Caenorhabditis elegans] 1.0E-177
blast CAB03897 Hypothetical protein C17D12.1a [Caenorhabditis elegans] ref|NP_492960.1| C17D12.1a [Caenorhabditis elegans] 1.0E-176
blast CAB03898 Hypothetical protein C17D12.1b [Caenorhabditis elegans] ref|NP_492961.1| C17D12.1b [Caenorhabditis elegans] 1.0E-137
blast CAB03897 Hypothetical protein C17D12.1a [Caenorhabditis elegans] ref|NP_492960.1| C17D12.1a [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.0E-26
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.0E-26
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.9E-20
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.0E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492960.1 4 7-29,39-58,162-184,204-226
NP_492961.1 2 100-122,142-164
C17D12.1a 4 7-29,39-58,162-184,204-226
C17D12.1b 2 100-122,142-164
SNAP00000011114 4 119-141,151-170,274-296,316-338
GENEFINDER00000011119 4 7-29,39-58,162-184,204-226
Sequence
Target Sequence 
>C. ELEGANS:186461_AT
gaagaagccgtttttcgtcacgatcacctgaatcgttcatctgcaactgagtggacaatg
tgtacacgttgtgattctctaaggccaccgagagctcatcattgcagagtttgcaagcgt
tgtgtcaggaaaatggaccatcattgcccctgggtgaacaattgcgtcggcgaatacaat
caaaaatggtttctccaattcattttctacgtgggagcctcaagtgcatactctttacta
gtcctatgcctctgctgggtatggcacgatgcttacggtatgacgggtatcaaaggaccg
ctcggagagaatttatatcacgcaaaagtaatccactcaattatgcttgcaatggagagc
gctctgttcgggctgtttgtacttgctgtttcctgtgatcagctcggcgcaattttcacc
gatgagacagcaattgaatcggttcaacgacgcggtcgaaattatttggcttcttcgaga
aggccgcgaaatagcaaagttgcaatgatgaaacaagtttgcggaccgggtcccaagctc
ctatggcttattccgtgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGCCGTTTTTCGTCACGATC 138 339 295 Antisense
GTACACGTTGTGATTCTCTAAGGCC 112 461 356 Antisense
TAAGGCCACCGAGAGCTCATCATTG 208 635 374 Antisense
CCCCTGGGTGAACAATTGCGTCGGC 408 257 441 Antisense
GGGAGCCTCAAGTGCATACTCTTTA 301 495 507 Antisense
GCCTCTGCTGGGTATGGCACGATGC 401 281 542 Antisense
CTCTGTTCGGGCTGTTTGTACTTGC 520 227 656 Antisense
TTGTACTTGCTGTTTCCTGTGATCA 656 707 671 Antisense
TCAGCTCGGCGCAATTTTCACCGAT 692 623 693 Antisense
TGAATCGGTTCAACGACGCGGTCGA 328 575 729 Antisense
CTCCTATGGCTTATTCCGTGTGCAA 470 233 832 Antisense
Sequence Source Affymetrix Proprietary Database