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[186460_s_at]

Description M01E11.5 /REP_DB=WormBase Gene ID /WP=CE12296 /TR=P91398 /GB=AAB37828.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 23      6grp_total > 97      4grp_total > 24      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 925
1 2 3 4 range
A 130.4
(-3)
M 		379.4
(-1.3)
P 		631
(0.5)
P 		985.6
(3)
P 		855
B 121.8
(-3)
P 		260.2
(-1.9)
P 		608.5
(1)
P 		850.4
(3)
P 		729
C 122.5
(-3)
M 		286
(-1.9)
P 		555.7
(-0.2)
P 		1047.2
(3)
P 		925
avr 124.9
(-3) 		308.5
(-1.7) 		598.4
(0.4) 		961.1
(3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5637
1 2 3 4 5 6 range
A 68.1
(-3)
A 		187.1
(-2.9)
P 		529.4
(-2.5)
P 		1785.2
(-1.2)
P 		3359.8
(0.5)
P 		5696.3
(3)
P 		5628
B 96.6
(-3)
A 		198.6
(-2.9)
P 		588.9
(-2.4)
P 		1493.6
(-1.2)
P 		3904.9
(1.9)
P 		4775.4
(3)
P 		4679
C 59.5
(-3)
A 		167.9
(-2.9)
P 		599.9
(-2.3)
P 		1586.3
(-1.1)
P 		3943.2
(1.8)
P 		4955.6
(3)
P 		4896
avr 74.7
(-3) 		184.5
(-2.9) 		572.7
(-2.4) 		1621.7
(-1.2) 		3736
(1.3) 		5142.4
(3) 		5068
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 47.5
(-3)
M 		82.4
(-1.2)
P 		165
(3)
P 		144.3
(1.9)
P 		118
B 38.8
(-3)
P 		64.3
(-1.9)
P 		141
(1.3)
P 		181.2
(3)
P 		142
C 40.6
(-3)
M 		82.2
(-1.4)
P 		193.7
(3)
P 		176.6
(2.3)
P 		153
avr 42.3
(-3) 		76.3
(-1.4) 		166.6
(3) 		167.4
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1768
1 2 3 4 5 6 range
A 12.6
(-3)
A 		66.6
(-2.8)
P 		115.3
(-2.6)
P 		452.8
(-1.1)
P 		1013.8
(1.4)
P 		1386.9
(3)
P 		1374
B 33.6
(-3)
A 		66.1
(-2.9)
P 		143
(-2.6)
P 		395.6
(-1.8)
P 		1586.5
(2.3)
P 		1780.7
(3)
P 		1747
C 22.1
(-3)
A 		51.2
(-2.9)
P 		152.7
(-2.5)
P 		319
(-1.9)
P 		1276
(1.6)
P 		1658.9
(3)
P 		1637
avr 22.8
(-3) 		61.3
(-2.9) 		137
(-2.6) 		389.1
(-1.6) 		1292.1
(1.8) 		1608.8
(3) 		1586
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186460_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1487
Sequence Type Exemplar sequence
Representative Public ID M01E11.5 NCBI
Target Description M01E11.5 /REP_DB=WormBase Gene ID /WP=CE12296 /TR=P91398 /GB=AAB37828.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059230 NCBI Caenorhabditis elegans C.Elegans Y-box family member (cey-3) (cey-3) mRNA, complete cds. 11/11 None
SNAP00000002372 ENSEMBL cdna:SNAP chromosome:CEL140:I:5571959:5572920:-1 11/11 None
GENEFINDER00000002384 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5571959:5572920:-1 11/11 None
M01E11.5.2 ENSEMBL cdna:known chromosome:CEL140:I:5571799:5573103:-1 gene:M01E11.5 11/11 None
M01E11.5.1 ENSEMBL cdna:known chromosome:CEL140:I:5571799:5573103:-1 gene:M01E11.5 11/11 None
M01E11.5.3 ENSEMBL cdna:known chromosome:CEL140:I:5571959:5572957:-1 gene:M01E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5571958-5572920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cey-3
Ensembl M01E11.5
Entrez Gene 172211 Entrez gene
SwissProt P91398 EMBL-EBI
WormBase CE12296 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37828 C.elegans y-box protein 3 [Caenorhabditis elegans] ref|NP_491631.1| C.Elegans Y-box family member (cey-3) [Caenorhabditis elegans] 1.0E-132
blast AAK21380 C.elegans y-box protein 2 [Caenorhabditis elegans] ref|NP_491645.1| C.Elegans Y-box family member (cey-2) [Caenorhabditis elegans] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002059 EMBL-EBI Cold-shock DNA-binding domain 4.2E-32
Sequence
Target Sequence 
>C. ELEGANS:186460_S_AT
gttcttaccgctggacttcaaggaaaggtgaagtggtactctgtacttcgtcgctatggg
ttcatttcccgtagtgatggagagaaggatgtcttcgttcaccaaacagctatttccaaa
tcggacactgagaaattttaccttcggacacttgccgatgaggaggaagtgctcttcgat
ctggtcgatggtaagaatggacctgaggctgcaaatgtcaccggaccagccggggtgaat
gtttctggatcgaaatatcgccatcagcttctctctcgcttccgtaagaatcgtaaaccg
aaaatcgttgttggagaggattttgattcaaaggaaactgaaaagcttgtcgaggctccg
gcagtagcaatggagaaaaagaagcaaagaaagcagcgtaagaataaaaaccgcaaacag
aaggaccagaagggagcaggtgatgctgccgactcttctgctactactgaatctctcggg
acctcttccgaaactgcttctccggactcgaaatcctgcaccaagatcatctctgaggaa
gctggactctccaagatcgatcgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTACCGCTGGACTTCAAGGAA 336 441 187 Antisense
CTGTACTTCGTCGCTATGGGTTCAT 2 239 227 Antisense
TTTACCTTCGGACACTTGCCGATGA 148 653 323 Antisense
AGTGCTCTTCGATCTGGTCGATGGT 674 59 354 Antisense
GACCTGAGGCTGCAAATGTCACCGG 508 381 386 Antisense
CTCTCTCGCTTCCGTAAGAATCGTA 256 231 457 Antisense
TGAAAAGCTTGTCGAGGCTCCGGCA 50 573 525 Antisense
AGGGAGCAGGTGATGCTGCCGACTC 125 59 617 Antisense
GACTCTTCTGCTACTACTGAATCTC 140 375 637 Antisense
GAAATCCTGCACCAAGATCATCTCT 82 363 696 Antisense
TGGACTCTCCAAGATCGATCGTTGC 638 547 729 Antisense
Sequence Source Affymetrix Proprietary Database