[Home] | [Total List]

[186459_at]

Description ZK1240.5 /REP_DB=WormBase Gene ID /WP=CE15537 /TR=O16679 /GB=AAB66146.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 53.5
(2.7)
A 		32.2
(-1.9)
A 		26.9
(-3)
A 		55.1
(3)
A 		28
B 50.8
(2.9)
A 		16.4
(-3)
A 		30.5
(-0.6)
A 		51.3
(3)
A 		35
C 29.8
(-1.3)
A 		4.6
(-3)
A 		38.5
(-0.7)
A 		94.9
(3)
P 		90
avr 44.7
(0.3) 		17.7
(-3) 		32
(-1.3) 		67.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 32.5
(1.1)
A 		11.7
(-3)
A 		34.3
(1.5)
A 		33
(1.2)
A 		35
(1.6)
A 		41.8
(3)
A 		30
B 39.4
(2)
A 		15.9
(-3)
A 		32
(0.4)
A 		39.6
(2)
A 		44.1
(3)
A 		16.5
(-2.9)
A 		28
C 29.7
(0.9)
A 		43.4
(2.8)
A 		44.9
(3)
A 		39.7
(2.3)
A 		21.4
(-0.3)
A 		1.6
(-3)
A 		43
avr 33.9
(1.8) 		23.7
(-1.7) 		37.1
(2.9) 		37.4
(3) 		33.5
(1.7) 		20
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.5
(3)
A 		7
(-3)
A 		7
(-3)
A 		8.1
(-2.5)
A 		13
B 16.2
(3)
A 		4
(-3)
A 		7.1
(-1.5)
A 		10.9
(0.4)
A 		12
C 9.9
(0.5)
A 		1.3
(-3)
A 		13.4
(1.9)
A 		16
(3)
P 		15
avr 15.2
(3) 		4.1
(-3) 		9.2
(-0.2) 		11.7
(1.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6
(-1.3)
A 		4.2
(-3)
A 		7.5
(0.1)
A 		8.4
(0.9)
A 		10.6
(3)
A 		10.2
(2.6)
A 		6
B 13.7
(1)
A 		5.3
(-3)
A 		7.8
(-1.8)
A 		10.5
(-0.5)
A 		17.9
(3)
A 		6.2
(-2.6)
A 		13
C 11
(2)
A 		13.2
(3)
A 		11.4
(2.1)
A 		8
(0.5)
A 		6.9
(0)
A 		0.5
(-3)
A 		13
avr 10.2
(1.5) 		7.6
(-1.1) 		8.9
(0.2) 		9
(0.3) 		11.8
(3) 		5.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5037
Sequence Type Exemplar sequence
Representative Public ID ZK1240.5 NCBI
Target Description ZK1240.5 /REP_DB=WormBase Gene ID /WP=CE15537 /TR=O16679 /GB=AAB66146.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061836 NCBI Caenorhabditis elegans ZK1240.5 (ZK1240.5) mRNA, complete cds. 11/11 None
SNAP00000039222 ENSEMBL cdna:SNAP chromosome:CEL140:II:2316261:2317878:-1 9/11 None
GENEFINDER00000039232 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2316261:2317878:-1 10/11 None
ZK1240.5 ENSEMBL cdna:known chromosome:CEL140:II:2316365:2317878:-1 gene:ZK1240.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2316363-2317877(-) 91.81 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.5
Entrez Gene 191540 Entrez gene
SwissProt O16679 EMBL-EBI
WormBase CE15537 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 1.0E-173
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 1.0E-144
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 1.0E-112
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 2.0E-83
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 3.0E-65
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 3.0E-62
blast AAB66082 Hypothetical protein B0281.3 [Caenorhabditis elegans] ref|NP_494232.1| B0281.3 [Caenorhabditis elegans] 2.0E-57
blast AAB66082 Hypothetical protein B0281.3 [Caenorhabditis elegans] ref|NP_494232.1| B0281.3 [Caenorhabditis elegans] 7.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.4E-5
Sequence
Target Sequence 
>C. ELEGANS:186459_AT
gcatccgtcgaatctagctgaatttgtatgtattaaaaaaaatttttttttgatcgactt
ccaaaattatgagtggcaaaaactaagtaattgccactttttgacagaagactattgccc
tttaaaaaataaactgatatgtcgaatttgtgagcatactggaaatcataaaggtcatac
aaaagaactgttaacatcaagagccgccgaacttagaagaatccttaaacgccgtgttat
gcatattcaatccaacattctaaagtacaaatcggaaacaagtgtgatagaaggagccga
gaagattaatgagcaacttctaaatatgaaattgaaagagatcaaagatcatttcgatcg
aattcgtcagtcaactggtgaaaaagaaaagcaactaaccgatgaactaacggcacgtgc
caccaaaatacgggagatggataatacgacgaaagctaacctgcttctctggcaacaaca
gctttctggaaattctgaagaaactgagaaacgcatcgatatgaacgatttcgatttata
taccgcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCGTCGAATCTAGCTGAATTT 607 307 285 Antisense
TTGACAGAAGACTATTGCCCTTTAA 290 683 385 Antisense
GAACTGTTAACATCAAGAGCCGCCG 680 347 469 Antisense
GAGCCGCCGAACTTAGAAGAATCCT 513 385 485 Antisense
GAAGAATCCTTAAACGCCGTGTTAT 507 339 500 Antisense
GCCGTGTTATGCATATTCAATCCAA 6 285 515 Antisense
CGATGAACTAACGGCACGTGCCACC 166 249 684 Antisense
GGCACGTGCCACCAAAATACGGGAG 661 535 696 Antisense
GACGAAAGCTAACCTGCTTCTCTGG 53 379 732 Antisense
GCTTCTCTGGCAACAACAGCTTTCT 77 307 747 Antisense
ACGATTTCGATTTATATACCGCGGG 658 91 809 Antisense
Sequence Source Affymetrix Proprietary Database