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[186458_s_at]

Description Y57A10C.1 /REP_DB=WormBase Gene ID /WP=CE22632 /TR=O62487 /GB=CAA19553.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 10.2
(-3)
A 		45.7
(-0.6)
A 		36.1
(-1.3)
A 		99.7
(3)
A 		90
B 53.5
(0.4)
A 		84.1
(3)
A 		18.7
(-2.6)
A 		14.2
(-3)
A 		70
C 67.1
(-0.6)
A 		20.6
(-3)
A 		24
(-2.8)
A 		135
(3)
A 		114
avr 43.6
(-1.2) 		50.1
(-0.5) 		26.3
(-3) 		83
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 18.6
(-2.4)
A 		51.9
(0.9)
A 		12.4
(-3)
A 		72.9
(3)
A 		43.1
(0)
A 		67
(2.4)
A 		61
B 24.8
(-1.8)
A 		34.7
(-0.9)
A 		56.7
(1.3)
A 		16.8
(-2.6)
A 		12.9
(-3)
A 		74.5
(3)
A 		62
C 10.4
(-3)
A 		14.8
(-2.8)
A 		19.4
(-2.6)
A 		59.1
(-0.7)
A 		47.9
(-1.2)
A 		137.3
(3)
A 		127
avr 17.9
(-3) 		33.8
(-1.7) 		29.5
(-2.1) 		49.6
(-0.5) 		34.6
(-1.7) 		92.9
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.7
(-3)
A 		9.9
(0.4)
A 		9.4
(0.1)
A 		14.6
(3)
A 		11
B 17.1
(1.8)
A 		20.8
(3)
A 		4.3
(-2.6)
A 		3
(-3)
A 		18
C 22.2
(2.8)
A 		5.9
(-3)
A 		8.4
(-2.1)
A 		22.8
(3)
A 		17
avr 14.3
(3) 		12.2
(1.2) 		7.4
(-3) 		13.5
(2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.4
(-2.7)
A 		18.4
(3)
A 		2.7
(-3)
A 		18.5
(3)
A 		13
(0.9)
A 		16.3
(2.2)
A 		16
B 8.6
(-1.9)
A 		11.5
(-1.2)
A 		13.8
(-0.6)
A 		4.4
(-3)
A 		5.2
(-2.8)
A 		27.8
(3)
A 		23
C 3.9
(-3)
A 		4.5
(-2.9)
A 		4.9
(-2.9)
A 		11.9
(-1.9)
A 		15.5
(-1.3)
A 		46
(3)
A 		42
avr 5.3
(-3) 		11.5
(-1.5) 		7.1
(-2.6) 		11.6
(-1.5) 		11.2
(-1.6) 		30
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186458_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2947
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.1 NCBI
Target Description Y57A10C.1 /REP_DB=WormBase Gene ID /WP=CE22632 /TR=O62487 /GB=CAA19553.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064234 NCBI Caenorhabditis elegans Y57A10C.1 (Y57A10C.1) mRNA, complete cds. 11/11 None
SNAP00000005453 ENSEMBL cdna:SNAP chromosome:CEL140:II:12411630:12412349:-1 10/11 None
Y57A10C.1 ENSEMBL cdna:known chromosome:CEL140:II:12411576:12412388:-1 gene:Y57A10C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12411575-12412346(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10C.1
Entrez Gene 174880 Entrez gene
SwissProt O62487 EMBL-EBI
WormBase CE22632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05753 Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] emb|CAA19553.1| Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] ref|NP_496635.1| Y57A10C.1 [Caenorhabditis elegans] 1.0E-128
blast CAB05753 Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] emb|CAA19553.1| Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] ref|NP_496635.1| Y57A10C.1 [Caenorhabditis elegans] 1.0E-116
blast CAB05751 Hypothetical protein F57G9.3 [Caenorhabditis elegans] ref|NP_496634.1| F57G9.3 [Caenorhabditis elegans] 3.0E-48
blast CAB05751 Hypothetical protein F57G9.3 [Caenorhabditis elegans] ref|NP_496634.1| F57G9.3 [Caenorhabditis elegans] 3.0E-43
blast AAG37970 Hypothetical protein Y82E9BL.3 [Caenorhabditis elegans] ref|NP_497391.1| Y82E9BL.3 [Caenorhabditis elegans] 6.0E-32
blast AAG37970 Hypothetical protein Y82E9BL.3 [Caenorhabditis elegans] ref|NP_497391.1| Y82E9BL.3 [Caenorhabditis elegans] 6.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496635.1 6 7-26,36-58,71-93,106-128,141-163,173-195
Y57A10C.1 6 7-26,36-58,71-93,106-128,141-163,173-195
SNAP00000005453 6 7-26,36-58,71-93,106-128,141-163,173-195
Sequence
Target Sequence 
>C. ELEGANS:186458_S_AT
gttgtgccttacattgttgctattctcccatttctagttgcagttcctgtcgttttattt
atacgaagaggaaaagctttaccaattcaaatgttctactttaatcaagttataatagca
atatcagcggtctttttaagtatttgccttccgatgatcatgacgccatttcctatcaga
agtcttacaaccacacttgctgtcgttattctccactgtccgccggtatatctactttgt
tgcatttcaattgaagtatggcacttagtatcaccgattcaatacactttcccaaaaacc
accagactctcgaatctccagaaattcaaaatttctgccttcttcttcatcctggaaacg
tattattattatacgtgttccagggatctgaaccactggccgaccaatatactcatactt
acggcaattaatataatgacaataccagcgttgtttgttgcgttttatgcatgcaacgct
gatagtattcattcatcacgtgtgcagtctggaggcgggttaatcgtgaccaggaaatgg
atcatgaaagggatggtctggaaccttgatcacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGCCTTACATTGTTGCTATTC 602 437 127 Antisense
TATTCTCCCATTTCTAGTTGCAGTT 483 661 147 Antisense
GTTGCAGTTCCTGTCGTTTTATTTA 37 439 163 Antisense
GTATTTGCCTTCCGATGATCATGAC 374 453 266 Antisense
ATCATGACGCCATTTCCTATCAGAA 254 29 283 Antisense
CACTGTCCGCCGGTATATCTACTTT 101 199 340 Antisense
TTCAAAATTTCTGCCTTCTTCTTCA 289 685 451 Antisense
GAACCACTGGCCGACCAATATACTC 458 343 516 Antisense
ATACCAGCGTTGTTTGTTGCGTTTT 153 23 568 Antisense
AGTATTCATTCATCACGTGTGCAGT 442 63 610 Antisense
GGATGGTCTGGAACCTTGATCACGG 341 515 677 Antisense
Sequence Source Affymetrix Proprietary Database