[Home] | [Total List]

[186457_at]

Description Y49G5B.1 /REP_DB=WormBase Gene ID /WP=CE22274 /TR=Q9UAZ1 /GB=AAD14759.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 110.2
(2)
P 		56
(-1.9)
A 		40
(-3)
A 		123.5
(3)
P 		84
B 106.3
(3)
P 		90.7
(1)
A 		74.8
(-1)
A 		59.5
(-3)
A 		47
C 62.6
(-1)
P 		99
(1.7)
M 		36
(-3)
A 		116
(3)
P 		80
avr 93
(2.2) 		81.9
(0.8) 		50.3
(-3) 		99.7
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 64.8
(3)
A 		36.5
(-0.3)
A 		52.7
(1.6)
A 		62.2
(2.7)
A 		62.1
(2.7)
A 		12.6
(-3)
A 		52
B 80.5
(3)
A 		59.9
(0.7)
P 		41.6
(-1.3)
A 		63.9
(1.2)
P 		43.5
(-1.1)
P 		26.4
(-3)
A 		54
C 54
(0.5)
M 		79.6
(3)
P 		18.1
(-3)
A 		31.7
(-1.7)
A 		37.7
(-1.1)
A 		54.4
(0.5)
A 		62
avr 66.4
(3) 		58.7
(1.7) 		37.5
(-1.9) 		52.6
(0.7) 		47.8
(-0.2) 		31.1
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 40.1
(3)
P 		12.2
(-2.6)
A 		10.4
(-3)
A 		18.1
(-1.4)
P 		30
B 33.9
(3)
P 		22.4
(-0.3)
A 		17.3
(-1.7)
A 		12.7
(-3)
A 		21
C 20.7
(0.1)
P 		28.5
(3)
M 		12.6
(-3)
A 		19.6
(-0.4)
P 		16
avr 31.6
(3) 		21
(-0.5) 		13.4
(-3) 		16.8
(-1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.9
(0.4)
A 		13
(0.8)
A 		11.5
(0.2)
A 		15.8
(1.9)
A 		18.7
(3)
A 		3.1
(-3)
A 		16
B 28
(3)
A 		19.9
(0.3)
P 		10.1
(-2.9)
A 		16.9
(-0.7)
P 		17.7
(-0.4)
P 		9.8
(-3)
A 		18
C 20
(1.7)
M 		24.3
(3)
P 		4.6
(-3)
A 		6.4
(-2.5)
A 		12.2
(-0.7)
A 		18.2
(1.1)
A 		20
avr 20
(3) 		19.1
(2.5) 		8.7
(-3) 		13
(-0.7) 		16.2
(1) 		10.4
(-2.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11691
Sequence Type Exemplar sequence
Representative Public ID Y49G5B.1 NCBI
Target Description Y49G5B.1 /REP_DB=WormBase Gene ID /WP=CE22274 /TR=Q9UAZ1 /GB=AAD14759.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071995 NCBI Caenorhabditis elegans Y49G5B.1 (Y49G5B.1) mRNA, complete cds. 11/11 None
SNAP00000038714 ENSEMBL cdna:SNAP chromosome:CEL140:V:5228917:5229499:1 10/11 None
GENEFINDER00000038717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5226827:5229499:1 11/11 None
Y49G5B.1 ENSEMBL cdna:known chromosome:CEL140:V:5226818:5230292:1 gene:Y49G5B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038713 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5226826-5229499(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49G5B.1
Entrez Gene 178908 Entrez gene
SwissProt Q9UAZ1 EMBL-EBI
WormBase CE22274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14759 Hypothetical protein Y49G5B.1 [Caenorhabditis elegans] ref|NP_504396.1| Y49G5B.1 [Caenorhabditis elegans] 1.0E-163
blast CAE64097 Hypothetical protein CBG08704 [Caenorhabditis briggsae] 1.0E-135
blast AAD14759 Hypothetical protein Y49G5B.1 [Caenorhabditis elegans] ref|NP_504396.1| Y49G5B.1 [Caenorhabditis elegans] 1.0E-91
blast CAE64097 Hypothetical protein CBG08704 [Caenorhabditis briggsae] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:186457_AT
gcactgcatgtgcttttcagatttctgcaataaactcgtcgatcgcagaaataccgatga
agttgatccaatggctccactccttccgacggccgagtttctcaagcagaatccactggt
agattatgatgctccgaacctcggtgactacgttgatgagggatctcacccgactccgaa
gcacgtactcttcccgtcggctgacaagcaggatccacgagtggctggagtagaagatga
ggaagatgatcttgtcccagtcggatttgctgattatgaagaagtcgaggagaaacggcg
gactacaaagcatcacaaggaggcttcaactgttgccccaactactccagacggtgtcga
acttccacacgataccgagtcgaatgtggttcgagccgatgttattgatgatatggatga
gaatagacggccaatgagcagagttccagaagatcgaaaagaaaacgaggtgtcagctag
tttcaagccaccatcctgggtgcttttcgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGCATGTGCTTTTCAGATTTC 45 317 273 Antisense
GACGGCCGAGTTTCTCAAGCAGAAT 327 375 360 Antisense
TATGATGCTCCGAACCTCGGTGACT 252 657 397 Antisense
GACAAGCAGGATCCACGAGTGGCTG 666 363 475 Antisense
ATCTTGTCCCAGTCGGATTTGCTGA 580 29 521 Antisense
AACGGCGGACTACAAAGCATCACAA 486 139 566 Antisense
TACTCCAGACGGTGTCGAACTTCCA 621 167 615 Antisense
CGAACTTCCACACGATACCGAGTCG 158 253 630 Antisense
GACGGCCAATGAGCAGAGTTCCAGA 651 375 698 Antisense
GTGTCAGCTAGTTTCAAGCCACCAT 181 483 742 Antisense
CACCATCCTGGGTGCTTTTCGTTTT 122 203 761 Antisense
Sequence Source Affymetrix Proprietary Database