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[186455_at] 7TM chemoreceptor, srg family

Description T02B11.1 /REP_DB=WormBase Gene ID /WP=CE13032 /TR=O16974 /GB=AAB69903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 12      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 67.1
(-1.4)
A 		71
(-1.2)
A 		44.7
(-3)
A 		130.3
(3)
A 		86
B 84.4
(0.6)
A 		71.3
(-2.3)
A 		68.3
(-3)
A 		95.1
(3)
A 		27
C 87.1
(-1.2)
A 		73.7
(-1.7)
A 		38.8
(-3)
A 		199.2
(3)
P 		160
avr 79.5
(-1.1) 		72
(-1.6) 		50.6
(-3) 		141.5
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 77.9
(3)
A 		34.9
(-3)
A 		59.2
(0.4)
A 		45.2
(-1.6)
A 		77.7
(3)
A 		56.7
(0)
A 		43
B 78.9
(2.3)
A 		83.5
(3)
A 		52.3
(-1.5)
A 		67.9
(0.7)
A 		66
(0.5)
A 		42
(-3)
A 		42
C 45.4
(1.2)
A 		63.5
(3)
A 		53.6
(2)
A 		2.9
(-3)
A 		36.8
(0.4)
P 		36
(0.3)
A 		61
avr 67.4
(3) 		60.6
(1.6) 		55
(0.4) 		38.7
(-3) 		60.2
(1.5) 		44.9
(-1.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.4
(3)
A 		15.4
(-1.3)
A 		11.7
(-3)
A 		19.1
(0.5)
A 		13
B 26.9
(3)
A 		17.6
(-2)
A 		15.8
(-3)
A 		20.3
(-0.6)
A 		11
C 28.8
(1.6)
A 		21.2
(-0.7)
A 		13.5
(-3)
A 		33.6
(3)
P 		20
avr 26.7
(3) 		18.1
(-1) 		13.7
(-3) 		24.3
(1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14.4
(-1.5)
A 		12.4
(-2.5)
A 		12.9
(-2.3)
A 		11.5
(-3)
A 		23.4
(3)
A 		13.8
(-1.8)
A 		12
B 27.5
(2.9)
A 		27.8
(3)
A 		12.7
(-3)
A 		18
(-0.9)
A 		26.8
(2.6)
A 		15.7
(-1.8)
A 		15
C 16.8
(2.2)
A 		19.4
(3)
A 		13.7
(1.2)
A 		0.6
(-3)
A 		11.9
(0.6)
P 		12
(0.6)
A 		19
avr 19.6
(2.4) 		19.9
(2.6) 		13.1
(-1.3) 		10
(-3) 		20.7
(3) 		13.8
(-0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15789
Sequence Type Exemplar sequence
Representative Public ID T02B11.1 NCBI
Target Description T02B11.1 /REP_DB=WormBase Gene ID /WP=CE13032 /TR=O16974 /GB=AAB69903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070947 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-53) (srg-53) mRNA, complete cds. 11/11 None
T02B11.1 ENSEMBL cdna:known chromosome:CEL140:V:879623:881404:1 gene:T02B11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007468 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:879622-881404(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-53
Ensembl T02B11.1
Entrez Gene 187980 Entrez gene
SwissProt O16974 EMBL-EBI
WormBase CE13032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69903 Serpentine receptor, class g (gamma) protein 53 [Caenorhabditis elegans] ref|NP_503348.1| Serpentine Receptor, class G (gamma) family member (srg-53) [Caenorhabditis elegans] sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53) 1.0E-162
blast AAF60571 Serpentine receptor, class g (gamma) protein 50 [Caenorhabditis elegans] ref|NP_501100.2| Serpentine Receptor, class G (gamma) family member (srg-50) [Caenorhabditis elegans] 1.0E-113
blast CAB03214 Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] emb|CAA22071.1| Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] ref|NP_502827.1| Serpentine Receptor, class G (gamma) family member (srg-51) [Caenorhabditis elegans] 8.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503348.1 6 7-29,39-61,123-145,168-190,211-230,240-262
T02B11.1 6 7-29,39-61,123-145,168-190,211-230,240-262
Sequence
Target Sequence 
>C. ELEGANS:186455_AT
gttcttccacgttcaaagtgctagtacaatttgtatatgttgtcatcgattatcaactgc
aatatttgataattcaaatagattttggagcagattttatcttttggtgtatgctctaat
tattttatattcatttcttgccgttcagcttttgtatcgagctccgataaagtttgatta
tgaattgaacaagttctattcggaacctgcaactctggaccaacgtctttctgttgcaat
gtatcttcgttgttttatgagtggatacctattggcaattattataatcgccctctcaac
actgtatcaagtcagaaaacgaattgcaccgttcgatcatctgcacaagaatcttcttcg
caaaatgtccctgatcgcattttcccatacttttgtttttacaatgttactggcttggca
gacattaaactctttcgtcgtttatgcaagttttatagaacttctgatgattgtatctga
tatgatatcattttcaatggcctacatcctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCCACGTTCAAAGTGCTAGT 123 445 279 Antisense
TATATTCATTTCTTGCCGTTCAGCT 472 661 404 Antisense
GTTCAGCTTTTGTATCGAGCTCCGA 400 445 421 Antisense
CTATTCGGAACCTGCAACTCTGGAC 95 223 474 Antisense
AACTCTGGACCAACGTCTTTCTGTT 498 139 489 Antisense
CAATTATTATAATCGCCCTCTCAAC 526 179 554 Antisense
GCCCTCTCAACACTGTATCAAGTCA 128 287 568 Antisense
GAATTGCACCGTTCGATCATCTGCA 486 323 599 Antisense
GAATCTTCTTCGCAAAATGTCCCTG 142 323 627 Antisense
GGCAGACATTAAACTCTTTCGTCGT 48 537 695 Antisense
CATTTTCAATGGCCTACATCCTGTT 517 215 767 Antisense
Sequence Source Affymetrix Proprietary Database