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[186453_at]

Description ZK1248.5 /REP_DB=WormBase Gene ID /WP=CE02905 /TR=Q23414 /GB=AAC71086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.4
(3)
A 		2.4
(-3)
A 		2.6
(-2.7)
A 		4.4
(0)
A 		4
B 2.9
(-1)
A 		2.3
(-1.8)
A 		5.6
(3)
A 		1.5
(-3)
A 		4
C 1.6
(-2.6)
A 		3.2
(-1.4)
A 		1.1
(-3)
A 		9
(3)
A 		8
avr 3.6
(-0.5) 		2.6
(-3) 		3.1
(-1.8) 		5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 2.4
(-3)
A 		6.3
(-2.9)
A 		2.1
(-3)
A 		65.7
(-1.5)
A 		135.7
(0.1)
A 		262.5
(3)
P 		260
B 2.1
(-3)
A 		5.5
(-2.9)
A 		5.1
(-2.9)
A 		36.7
(-2.3)
A 		167.4
(0.5)
P 		288.9
(3)
P 		287
C 2.1
(-3)
A 		2.7
(-3)
A 		6.7
(-2.9)
A 		12.9
(-2.8)
A 		171.8
(0.6)
P 		287
(3)
P 		285
avr 2.2
(-3) 		4.8
(-2.9) 		4.6
(-2.9) 		38.4
(-2.2) 		158.3
(0.4) 		279.5
(3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(3)
A 		0.5
(-3)
A 		0.7
(-2.3)
A 		0.6
(-2.7)
A 		2
B 0.9
(0.6)
A 		0.6
(-1.2)
A 		1.3
(3)
A 		0.3
(-3)
A 		1
C 0.5
(-2.5)
A 		0.9
(-0.3)
A 		0.4
(-3)
A 		1.5
(3)
A 		1
avr 1.2
(3) 		0.7
(-3) 		0.8
(-1.8) 		0.8
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.2
(-2.8)
A 		0.5
(-3)
A 		16.7
(-1.5)
A 		40.9
(0.8)
A 		63.9
(3)
P 		64
B 0.7
(-3)
A 		1.8
(-2.9)
A 		1.2
(-3)
A 		9.7
(-2.5)
A 		68
(0.8)
P 		107.7
(3)
P 		107
C 0.8
(-3)
A 		0.8
(-3)
A 		1.7
(-2.9)
A 		2.6
(-2.9)
A 		55.6
(0.5)
P 		96.1
(3)
P 		95
avr 0.6
(-3) 		1.6
(-2.9) 		1.1
(-3) 		9.7
(-2.4) 		54.8
(0.7) 		89.2
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5122
Sequence Type Exemplar sequence
Representative Public ID ZK1248.5 NCBI
Target Description ZK1248.5 /REP_DB=WormBase Gene ID /WP=CE02905 /TR=Q23414 /GB=AAC71086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062749 NCBI Caenorhabditis elegans ZK1248.5 (ZK1248.5) mRNA, complete cds. 11/11 None
SNAP00000041370 ENSEMBL cdna:SNAP chromosome:CEL140:II:5810544:5811689:1 11/11 None
GENEFINDER00000041395 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5810544:5811689:1 11/11 None
ZK1248.5 ENSEMBL cdna:known chromosome:CEL140:II:5810544:5811689:1 gene:ZK1248.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5810540-5811686(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.5
Entrez Gene 191544 Entrez gene
SwissProt Q23414 EMBL-EBI
WormBase CE02905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71086 Hypothetical protein ZK1248.5 [Caenorhabditis elegans] ref|NP_495150.1| ZK1248.5 [Caenorhabditis elegans] 0.0
blast CAE59224 Hypothetical protein CBG02542 [Caenorhabditis briggsae] 1.0E-137
blast CAE69011 Hypothetical protein CBG15004 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 2.7E-107
Sequence
Target Sequence 
>C. ELEGANS:186453_AT
gacaggctcaatggatcatctgcacaagtactacgtctcgaactatgactttggtgatct
gtgcattccgaaggatttggatacatctggaatagttgttaagaatgctcgcgatgtacc
tgatactgatatcttgaagtatgatgccaaagttttcaaatatgaaagatcaaaatacgt
tcttggacaaattcgagaagacttcggacgagttgcatacaacgagaaaggcgacgtcat
cggaattggagcaatttctgtgtatccatctggtgaatgtgcaattactccgatgtatgc
tgatgacatccgcattgctcgaacaattctgaaaaatattctcgaggagatgacgctgga
cgctgaaaagtactggagactccaaattcggtctcatgatcaacataccggaagctatgg
atggattcgtccattcttgtctacaatgacccatcgttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGGCTCAATGGATCATCTGCAC 384 369 465 Antisense
ATCATCTGCACAAGTACTACGTCTC 705 29 479 Antisense
GACTTTGGTGATCTGTGCATTCCGA 33 373 511 Antisense
AGAATGCTCGCGATGTACCTGATAC 533 75 566 Antisense
GCAATTTCTGTGTATCCATCTGGTG 422 323 715 Antisense
GTGAATGTGCAATTACTCCGATGTA 549 481 737 Antisense
GATGACATCCGCATTGCTCGAACAA 26 413 766 Antisense
TCTCGAGGAGATGACGCTGGACGCT 144 611 804 Antisense
ACTCCAAATTCGGTCTCATGATCAA 431 99 843 Antisense
ATGGATTCGTCCATTCTTGTCTACA 227 51 885 Antisense
TGTCTACAATGACCCATCGTTCAGA 1 559 902 Antisense
Sequence Source Affymetrix Proprietary Database