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[186452_at]

Description ZC190.10 /REP_DB=WormBase Gene ID /WP=CE18432 /TR=O76707 /GB=AAC26963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      4grp_high_8_8 > 06      6grp_total > 60      4grp_total > 02      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 77.7
(-3)
P 		76.3
(-3)
A 		97.2
(-2.3)
P 		266.1
(3)
P 		190
B 81.9
(-1.9)
P 		71.1
(-3)
P 		70.7
(-3)
P 		134.2
(3)
P 		64
C 79.7
(-2.6)
P 		94.5
(-2.3)
P 		62.7
(-3)
A 		340.1
(3)
P 		277
avr 79.8
(-2.9) 		80.6
(-2.9) 		76.9
(-3) 		246.8
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 111.8
(2.6)
M 		73.4
(-0.2)
A 		117.8
(3)
P 		100.9
(1.8)
P 		86.3
(0.7)
P 		34
(-3)
A 		84
B 80
(0.3)
P 		56.2
(-3)
P 		75.5
(-0.3)
P 		99.5
(3)
P 		86.6
(1.2)
P 		64
(-1.9)
P 		43
C 51.5
(-3)
A 		116.5
(2.4)
P 		70.3
(-1.4)
A 		124.2
(3)
P 		65.6
(-1.8)
P 		85.6
(-0.2)
P 		73
avr 81.1
(-0.5) 		82
(-0.3) 		87.9
(0.4) 		108.2
(3) 		79.5
(-0.7) 		61.2
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 28.3
(0.1)
P 		16.6
(-3)
A 		25.4
(-0.6)
P 		39
(3)
P 		22
B 26.1
(1.8)
P 		17.6
(-2.4)
P 		16.4
(-3)
P 		28.6
(3)
P 		12
C 26.4
(-2.2)
P 		27.2
(-2.1)
P 		21.9
(-3)
A 		57.3
(3)
P 		35
avr 26.9
(-1.2) 		20.5
(-3) 		21.2
(-2.8) 		41.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 20.6
(1.1)
M 		26.1
(3)
A 		25.7
(2.9)
P 		25.6
(2.8)
P 		26.1
(3)
P 		8.3
(-3)
A 		18
B 27.8
(0.4)
P 		18.7
(-2.9)
P 		18.3
(-3)
P 		26.4
(-0.1)
P 		35.2
(3)
P 		23.9
(-1)
P 		17
C 19.1
(-2.6)
A 		35.5
(3)
P 		17.9
(-3)
A 		25
(-0.6)
P 		21.2
(-1.9)
P 		28.7
(0.7)
P 		18
avr 22.5
(-1.2) 		26.8
(2.4) 		20.6
(-2.8) 		25.7
(1.5) 		27.5
(3) 		20.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12061
Sequence Type Exemplar sequence
Representative Public ID ZC190.10 NCBI
Target Description ZC190.10 /REP_DB=WormBase Gene ID /WP=CE18432 /TR=O76707 /GB=AAC26963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072840 NCBI Caenorhabditis elegans ZC190.10 (ZC190.10) mRNA, complete cds. 11/11 None
ZC190.10 ENSEMBL cdna:known chromosome:CEL140:V:8698263:8699108:-1 gene:ZC190.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y68A4A.12 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8698263-8699109(-) 96.49 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.10
Entrez Gene 191099 Entrez gene
SwissProt O76707 EMBL-EBI
WormBase CE18432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26963 Hypothetical protein ZC190.10 [Caenorhabditis elegans] ref|NP_505241.1| ZC190.10 [Caenorhabditis elegans] 6.0E-71
Sequence
Target Sequence 
>C. ELEGANS:186452_AT
ctaacgtggccgaggaagctgcgaaagctaggccattttgtcctatgctgaagaattttc
atcgatttcgttcgcttaatttggctattagccctgtttacttccgttttttcttcataa
tatctgaaaaccgcaacggaaacgcgtccaacaactcaaaacggtgccgaaatctacaaa
aaagtagttggctccaatgtcagcaaaaagaaaatttggagctcaacaaggaagccgatg
taatgccgtgcctggatgctcctgctcaattccgcgaaacagttcgccttactgcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACGTGGCCGAGGAAGCTGCGAA 66 227 65 Antisense
GCTGCGAAAGCTAGGCCATTTTGTC 491 297 82 Antisense
AGGCCATTTTGTCCTATGCTGAAGA 561 1 94 Antisense
GATTTCGTTCGCTTAATTTGGCTAT 452 423 128 Antisense
TTGGCTATTAGCCCTGTTTACTTCC 301 685 145 Antisense
GCAACGGAAACGCGTCCAACAACTC 133 285 197 Antisense
GTCCAACAACTCAAAACGGTGCCGA 654 475 210 Antisense
AGTAGTTGGCTCCAATGTCAGCAAA 628 57 247 Antisense
AGGAAGCCGATGTAATGCCGTGCCT 425 55 293 Antisense
TCCTGCTCAATTCCGCGAAACAGTT 180 585 324 Antisense
GAAACAGTTCGCCTTACTGCAACAG 14 357 340 Antisense
Sequence Source Affymetrix Proprietary Database