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[186451_s_at]

Description C13A2.11 /REP_DB=WormBase Gene ID /WP=CE08122 /TR=O16875 /GB=AAB69881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 19.5
(2.9)
A 		3.5
(-3)
A 		19.8
(3)
A 		15.8
(1.5)
A 		16
B 20.3
(-1.7)
A 		21.3
(-1.6)
A 		8.6
(-3)
A 		61.8
(3)
A 		53
C 4.6
(-2.9)
A 		26.8
(-1.7)
A 		3.5
(-3)
A 		114.1
(3)
A 		111
avr 14.8
(-2.5) 		17.2
(-2.3) 		10.6
(-3) 		63.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 6.4
(-3)
A 		4.6
(-3)
A 		41.1
(-2.2)
A 		263.8
(3)
P 		201
(1.5)
P 		48.8
(-2)
A 		259
B 7.2
(-2.8)
A 		2.2
(-3)
A 		57.8
(-1.1)
A 		181.1
(3)
P 		156.4
(2.2)
P 		49.6
(-1.4)
A 		179
C 17.9
(-2.6)
A 		4.6
(-3)
A 		29.7
(-2.3)
A 		216.5
(3)
P 		195.4
(2.4)
P 		56.6
(-1.5)
A 		212
avr 10.5
(-2.8) 		3.8
(-3) 		42.9
(-1.9) 		220.5
(3) 		184.3
(2) 		51.7
(-1.7) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.1
(3)
A 		0.8
(-3)
A 		5.2
(1.2)
A 		2.3
(-1.6)
A 		6
B 6.5
(-0.6)
A 		5.3
(-1.2)
A 		2
(-3)
A 		13.2
(3)
A 		11
C 1.5
(-2.9)
A 		7.7
(-0.8)
A 		1.2
(-3)
A 		19.2
(3)
A 		18
avr 5
(-1.5) 		4.6
(-1.8) 		2.8
(-3) 		11.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.6
(-3)
A 		8.9
(-2.3)
A 		66.9
(3)
P 		60.6
(2.4)
P 		11.9
(-2)
A 		66
B 2.5
(-2.8)
A 		0.7
(-3)
A 		14
(-1.7)
A 		48
(1.5)
P 		63.6
(3)
P 		18.5
(-1.3)
A 		63
C 6.6
(-2.5)
A 		1.4
(-3)
A 		7.6
(-2.4)
A 		43.5
(1.1)
P 		63.2
(3)
P 		18.9
(-1.3)
A 		62
avr 3.4
(-2.8) 		1.2
(-3) 		10.2
(-2.1) 		52.8
(2.1) 		62.5
(3) 		16.4
(-1.5) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186451_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11867
Sequence Type Exemplar sequence
Representative Public ID C13A2.11 NCBI
Target Description C13A2.11 /REP_DB=WormBase Gene ID /WP=CE08122 /TR=O16875 /GB=AAB69881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072448(11), NM_072450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072448 NCBI Caenorhabditis elegans C13A2.5 (C13A2.5) mRNA, complete cds. 11/11 A 
NM_072450 NCBI Caenorhabditis elegans C13A2.11 (C13A2.11) mRNA, complete cds. 11/11 A 
SNAP00000044271 ENSEMBL cdna:SNAP chromosome:CEL140:V:7280499:7281037:1 11/11 None
C13A2.5 ENSEMBL cdna:known chromosome:CEL140:V:7278445:7281037:1 gene:C13A2.5 11/11 A 
C13A2.11 ENSEMBL cdna:known chromosome:CEL140:V:7283468:7284565:-1 gene:C13A2.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044278 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7283468-7284566(-) 88.79 100.0
Public Domain and Genome References
Gene Title

Ensembl C13A2.5
C13A2.11
Entrez Gene 182553 Entrez gene
182558 Entrez gene
SwissProt O16875 EMBL-EBI
O16873 EMBL-EBI
WormBase CE36783 Wormbase
CE08117 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69877 Hypothetical protein C13A2.5 [Caenorhabditis elegans] ref|NP_504849.1| C13A2.5 [Caenorhabditis elegans] 0.0
blast T19496 hypothetical protein C27A7.2 - Caenorhabditis elegans 1.0E-140
blast AAY43981 Hypothetical protein ZK381.8 [Caenorhabditis elegans] ref|NP_001023614.1| ZK381.8 [Caenorhabditis elegans] 1.0E-130
blast AAB69881 Hypothetical protein C13A2.11 [Caenorhabditis elegans] ref|NP_504851.2| C13A2.11 [Caenorhabditis elegans] 1.0E-120
blast AAB69877 Hypothetical protein C13A2.5 [Caenorhabditis elegans] ref|NP_504849.1| C13A2.5 [Caenorhabditis elegans] 1.0E-89
blast AAB69881 Hypothetical protein C13A2.11 [Caenorhabditis elegans] ref|NP_504851.2| C13A2.11 [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.0E-99
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.4E-36
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.7E-36
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.4E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504849.1 1 35-57
C13A2.5 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:186451_S_AT
tcaataatccatgtgcagcggccgattggaaaagatggtccttcggatattcagcaactt
tggaaattcgaatttggtccatttaacgagacaattcaagacaatgatgtggaagcatta
gaaaacgatatttggagaattcgaaacatttctgcatttgctcaacttgacagtcgcctt
ccaaacaccgattactttttctcaattatttttaaatgctacctgtcagaattttacaat
cagccgttatccaagtgcccgaacgcggagagctgtgaaattccacaaaatgaaaactac
aaatgcatacacacagacgcaaaatatgtttccagtcccagtcttgagccatatacctat
cacttctacactgatgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATAATCCATGTGCAGCGGCCGA 103 631 268 Antisense
CATGTGCAGCGGCCGATTGGAAAAG 639 209 277 Antisense
TGGTCCATTTAACGAGACAATTCAA 462 551 342 Antisense
TCGAAACATTTCTGCATTTGCTCAA 383 601 408 Antisense
TTATCCAAGTGCCCGAACGCGGAGA 692 675 514 Antisense
AACGCGGAGAGCTGTGAAATTCCAC 459 145 529 Antisense
ACTACAAATGCATACACACAGACGC 479 101 563 Antisense
AAAATATGTTTCCAGTCCCAGTCTT 686 131 588 Antisense
TCCCAGTCTTGAGCCATATACCTAT 118 597 603 Antisense
CCATATACCTATCACTTCTACACTG 319 271 616 Antisense
ACCTATCACTTCTACACTGATGAAT 142 87 622 Antisense
Sequence Source Affymetrix Proprietary Database