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[186450_at]

Description C13A2.11 /REP_DB=WormBase Gene ID /WP=CE08122 /TR=O16875 /GB=AAB69881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.5
(-2.3)
A 		5.3
(-1.4)
A 		2.2
(-3)
A 		14.1
(3)
A 		12
B 1.5
(-3)
A 		3
(-1.3)
A 		6.8
(3)
A 		1.9
(-2.5)
A 		5
C 1.7
(-2.2)
A 		4.4
(3)
A 		1.3
(-3)
A 		4.2
(2.6)
A 		3
avr 2.2
(-3) 		4.2
(-0.3) 		3.4
(-1.4) 		6.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.2
(-3)
A 		11.8
(-1.2)
A 		2.6
(-2.9)
A 		34.6
(3)
A 		3.9
(-2.7)
A 		9.3
(-1.7)
A 		32
B 1.7
(-2.8)
A 		2.3
(-2.7)
A 		5
(-2.1)
A 		20.7
(1.1)
A 		29.9
(3)
A 		0.8
(-3)
A 		29
C 1.7
(-3)
A 		1.7
(-3)
A 		2.1
(-1.9)
A 		3.8
(3)
A 		3.6
(2.4)
A 		3.4
(1.9)
A 		2
avr 1.9
(-3) 		5.3
(-1.9) 		3.2
(-2.6) 		19.7
(3) 		12.5
(0.6) 		4.5
(-2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-0.2)
A 		1.2
(-0.6)
A 		0.6
(-3)
A 		2.1
(3)
A 		2
B 0.5
(-2.5)
A 		0.7
(-1.5)
A 		1.6
(3)
A 		0.4
(-3)
A 		1
C 0.6
(-2.3)
A 		1.3
(3)
A 		0.5
(-3)
A 		0.7
(-1.5)
A 		1
avr 0.8
(-3) 		1.1
(3) 		0.9
(-1) 		1.1
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		4.2
(-0.3)
A 		0.6
(-2.9)
A 		8.8
(3)
A 		1.2
(-2.4)
A 		2.3
(-1.6)
A 		8
B 0.6
(-2.8)
A 		0.8
(-2.7)
A 		1.2
(-2.5)
A 		5.5
(-0.4)
A 		12.2
(3)
A 		0.3
(-3)
A 		12
C 0.6
(-2)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.8
(0)
A 		1.1
(3)
A 		1.1
(3)
A 		1
avr 0.5
(-3) 		1.8
(-1.3) 		0.8
(-2.6) 		5
(3) 		4.8
(2.7) 		1.2
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11867
Sequence Type Exemplar sequence
Representative Public ID C13A2.11 NCBI
Target Description C13A2.11 /REP_DB=WormBase Gene ID /WP=CE08122 /TR=O16875 /GB=AAB69881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072450(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072450 NCBI Caenorhabditis elegans C13A2.11 (C13A2.11) mRNA, complete cds. 10/11 A 
C13A2.11 ENSEMBL cdna:known chromosome:CEL140:V:7283468:7284565:-1 gene:C13A2.11 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7283468-7284566(-) 88.79 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.11
Entrez Gene 182558 Entrez gene
SwissProt O16875 EMBL-EBI
WormBase CE36783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69881 Hypothetical protein C13A2.11 [Caenorhabditis elegans] ref|NP_504851.2| C13A2.11 [Caenorhabditis elegans] 1.0E-120
blast AAB69877 Hypothetical protein C13A2.5 [Caenorhabditis elegans] ref|NP_504849.1| C13A2.5 [Caenorhabditis elegans] 1.0E-77
blast T19496 hypothetical protein C27A7.2 - Caenorhabditis elegans 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.7E-36
Sequence
Target Sequence 
>C. ELEGANS:186450_AT
aaagttatgcccgctcaaaatcgagaaaagtctcaaatcatcactcacaaaagctccaaa
gcctgtcatcaaaccggaactttataacagtatgggaatttatggaagtaaacgagactg
gaaactgataaagcagacaaatcgattaactagtagccctttgataaaaattccttcaat
aatccatgtgcagcggccgattggaaaagatggtccttcggatattcagcaactttggaa
attcgaatttggtccatttaacgagacaattcaagacaatgatgtggaagcattagaaaa
cgatatttggagaattcgaaacatttctgcatttgctcaacttgacagtcgccttccaaa
caccgattactttttctcaattatttttaaatgctacctgtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTATGCCCGCTCAAAATCGAG 269 121 93 Antisense
AAAAGTCTCAAATCATCACTCACAA 266 133 118 Antisense
AAATCATCACTCACAAAAGCTCCAA 523 117 127 Antisense
AAAGCTCCAAAGCCTGTCATCAAAC 105 125 142 Antisense
GCCTGTCATCAAACCGGAACTTTAT 589 281 153 Antisense
GACAAATCGATTAACTAGTAGCCCT 710 355 228 Antisense
TAGTAGCCCTTTGATAAAAATTCCT 7 73 243 Antisense
AAAAATTCCTTCAATAATCCATGTG 278 129 258 Antisense
GGTCCTTCGGATATTCAGCAACTTT 75 503 304 Antisense
TCCAAACACCGATTACTTTTTCTCA 704 585 447 Antisense
TTATTTTTAAATGCTACCTGTCAGA 517 677 473 Antisense
Sequence Source Affymetrix Proprietary Database