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[186448_at]

Description C23F12.4 /REP_DB=WormBase Gene ID /WP=CE04048 /TR=Q18107 /GB=AAB37030.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 61      6grp_total > 40      4grp_total > 02      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1710
1 2 3 4 range
A 348.8
(-3)
P 		472.4
(-2.5)
P 		367.4
(-2.9)
P 		1900.4
(3)
P 		1552
B 350.1
(-3)
P 		460
(-2.6)
P 		357.3
(-3)
P 		2032.3
(3)
P 		1682
C 322.1
(-3)
P 		354.6
(-2.9)
P 		428.2
(-2.6)
P 		1756.3
(3)
P 		1434
avr 340.3
(-3) 		429
(-2.7) 		384.3
(-2.8) 		1896.3
(3) 		1556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 545.2
(2.5)
P 		528.6
(2.1)
P 		569.8
(3)
P 		550.3
(2.6)
P 		299.8
(-2.9)
P 		293
(-3)
P 		277
B 523.8
(1.6)
P 		526.6
(1.7)
P 		586
(3)
P 		483.2
(0.7)
P 		423.8
(-0.7)
P 		320.4
(-3)
P 		266
C 414.5
(-0.6)
P 		538.1
(3)
P 		526.9
(2.7)
P 		535.7
(2.9)
P 		331.9
(-3)
P 		361.1
(-2.2)
P 		206
avr 494.5
(1.3) 		531.1
(2.2) 		560.9
(3) 		523.1
(2) 		351.8
(-2.3) 		324.8
(-3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 127
(-2)
P 		102.5
(-2.8)
P 		96
(-3)
P 		278.2
(3)
P 		182
B 111.6
(-2.5)
P 		113.6
(-2.5)
P 		82.8
(-3)
P 		433.1
(3)
P 		350
C 106.6
(-2.9)
P 		101.9
(-3)
P 		149.2
(-1.5)
P 		296.1
(3)
P 		194
avr 115.1
(-2.8) 		106
(-3) 		109.3
(-2.9) 		335.8
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 100.5
(-1.5)
P 		188
(3)
P 		124.1
(-0.3)
P 		139.6
(0.5)
P 		90.5
(-2)
P 		71.3
(-3)
P 		117
B 182.3
(3)
P 		175.3
(2.3)
P 		142.3
(-0.8)
P 		128
(-2.2)
P 		172.2
(2)
P 		119.5
(-3)
P 		63
C 153.7
(1.9)
P 		164.2
(3)
P 		134.1
(-0.2)
P 		107.7
(-3)
P 		107.4
(-3)
P 		120.9
(-1.6)
P 		57
avr 145.5
(0.5) 		175.8
(3) 		133.5
(-0.5) 		125.1
(-1.2) 		123.4
(-1.4) 		103.9
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16246
Sequence Type Exemplar sequence
Representative Public ID C23F12.4 NCBI
Target Description C23F12.4 /REP_DB=WormBase Gene ID /WP=CE04048 /TR=Q18107 /GB=AAB37030.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077176 NCBI Caenorhabditis elegans C23F12.4 (C23F12.4) mRNA, complete cds. 11/11 None
SNAP00000036455 ENSEMBL cdna:SNAP chromosome:CEL140:X:9387366:9388893:1 11/11 None
GENEFINDER00000036468 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9387366:9388893:1 11/11 None
C23F12.4 ENSEMBL cdna:known chromosome:CEL140:X:9387366:9389119:1 gene:C23F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9387365-9388893(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23F12.4
Entrez Gene 181167 Entrez gene
SwissProt Q18107 EMBL-EBI
WormBase CE04048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37030 Hypothetical protein C23F12.4 [Caenorhabditis elegans] ref|NP_509577.1| C23F12.4 [Caenorhabditis elegans] 1.0E-104
blast CAE69828 Hypothetical protein CBG16149 [Caenorhabditis briggsae] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:186448_AT
gggctagaacagactactcccttgatgagtttgagacaaataaaagcttgcggacatctt
cttttgggaacattacaacttcgatgtgaacaacatggctcaacagaggatccacgaaaa
gaatcaataactgcacgagtattccttagaaagcggatgaaggagttgccagagaccgac
gacaaaaacaacaaagcatttgttctccgtgcactctacaaacttctcgacgcaaactat
gcaatcgtattcagcaaaattggacaagtatctggagaactcgcgttcctttcacaaatc
cacgacgatccggattttgatagtgtggaaactcaattcatttggacttgtgattatctc
ttcaaatccggacaattagaaaatgaatggagaggagactttattgtaccttccactcca
gaatttgagatgccaatggttgatgaaatggcagaagaagagcaagcgaactttatgatt
gaaagtgaaatggagcttcgtcgccaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTAGAACAGACTACTCCCTTGA 176 493 25 Antisense
AAAGCTTGCGGACATCTTCTTTTGG 676 123 67 Antisense
AACTGCACGAGTATTCCTTAGAAAG 128 141 153 Antisense
GAGTTGCCAGAGACCGACGACAAAA 87 399 187 Antisense
TGCACTCTACAAACTTCTCGACGCA 632 577 234 Antisense
GTATCTGGAGAACTCGCGTTCCTTT 197 455 292 Antisense
CGTTCCTTTCACAAATCCACGACGA 601 245 308 Antisense
TTATCTCTTCAAATCCGGACAATTA 699 679 378 Antisense
GGAGACTTTATTGTACCTTCCACTC 315 517 418 Antisense
GTACCTTCCACTCCAGAATTTGAGA 220 457 430 Antisense
GTGAAATGGAGCTTCGTCGCCAACT 529 481 509 Antisense
Sequence Source Affymetrix Proprietary Database