[Home] | [Total List]

[186447_at] 7TM receptor, sre family

Description Y57A10C.4 /REP_DB=WormBase Gene ID /WP=CE18416 /TR=O62489 /GB=CAA19546.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 14
(-2.5)
A 		35.6
(-0.3)
A 		8.9
(-3)
A 		67.9
(3)
A 		59
B 21.7
(-1.9)
A 		12.4
(-2.8)
A 		10.7
(-3)
A 		70.4
(3)
A 		60
C 13.8
(-2.8)
A 		10.2
(-3)
A 		14.9
(-2.8)
A 		137.2
(3)
A 		127
avr 16.5
(-2.6) 		19.4
(-2.4) 		11.5
(-3) 		91.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 46.5
(1.8)
A 		5.7
(-3)
A 		10
(-2.5)
A 		53.3
(2.6)
A 		57
(3)
A 		13.7
(-2.1)
A 		51
B 9.7
(-3)
A 		46.6
(2.2)
A 		14.5
(-2.3)
A 		45.7
(2.1)
A 		52.4
(3)
A 		13.8
(-2.4)
A 		43
C 4.9
(-3)
A 		51.2
(1.8)
A 		59.3
(2.6)
A 		62.8
(3)
A 		10.4
(-2.4)
A 		10.1
(-2.5)
A 		58
avr 20.4
(-1.9) 		34.5
(0.2) 		27.9
(-0.8) 		53.9
(3) 		39.9
(1) 		12.5
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 5.1
(-0.8)
A 		7.7
(1.3)
A 		2.3
(-3)
A 		9.9
(3)
A 		8
B 6.9
(-0.9)
A 		3.1
(-2.7)
A 		2.5
(-3)
A 		15
(3)
A 		13
C 4.6
(-2.5)
A 		2.9
(-3)
A 		5.2
(-2.3)
A 		23.1
(3)
A 		20
avr 5.5
(-2) 		4.6
(-2.4) 		3.3
(-3) 		16
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.6
(-0.4)
A 		2
(-3)
A 		2.2
(-2.9)
A 		13.5
(1.5)
A 		17.2
(3)
A 		3.3
(-2.5)
A 		15
B 3.4
(-3)
A 		15.5
(1.1)
A 		3.5
(-3)
A 		12.1
(-0.1)
A 		21.3
(3)
A 		5.2
(-2.4)
A 		18
C 1.8
(-3)
A 		15.6
(3)
A 		15.1
(2.8)
A 		12.6
(1.7)
A 		3.4
(-2.3)
A 		3.4
(-2.3)
A 		14
avr 4.6
(-2.6) 		11
(1.2) 		6.9
(-1.3) 		12.7
(2.2) 		14
(3) 		4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3227
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.4 NCBI
Target Description Y57A10C.4 /REP_DB=WormBase Gene ID /WP=CE18416 /TR=O62489 /GB=CAA19546.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064236 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-26) (sre-26) mRNA, complete cds. 11/11 None
GENEFINDER00000005462 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12419036:12420282:-1 11/11 None
Y57A10C.4 ENSEMBL cdna:known chromosome:CEL140:II:12419036:12420489:-1 gene:Y57A10C.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005455 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12419032-12420486(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-26
Ensembl Y57A10C.4
Entrez Gene 190349 Entrez gene
SwissProt O62489 EMBL-EBI
WormBase CE18416 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19546 Hypothetical protein Y57A10C.4 [Caenorhabditis elegans] ref|NP_496637.1| Serpentine Receptor, class E (epsilon) family member (sre-26) [Caenorhabditis elegans] sp|O62489|SRE26_CAEEL Serpentine receptor class epsilon-26 (Protein sre-26) 0.0
blast CAA19546 Hypothetical protein Y57A10C.4 [Caenorhabditis elegans] ref|NP_496637.1| Serpentine Receptor, class E (epsilon) family member (sre-26) [Caenorhabditis elegans] sp|O62489|SRE26_CAEEL Serpentine receptor class epsilon-26 (Protein sre-26) 1.0E-162
blast T27201 hypothetical protein Y57A10C.5 - Caenorhabditis elegans 1.0E-106
blast AAK18942 Serpentine receptor, class e (epsilon) protein 24 [Caenorhabditis elegans] ref|NP_503784.1| Serpentine Receptor, class E (epsilon) family member (sre-24) [Caenorhabditis elegans] 1.0E-101
blast T27201 hypothetical protein Y57A10C.5 - Caenorhabditis elegans 2.0E-84
blast AAK18942 Serpentine receptor, class e (epsilon) protein 24 [Caenorhabditis elegans] ref|NP_503784.1| Serpentine Receptor, class E (epsilon) family member (sre-24) [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496637.1 7 30-52,65-87,125-147,167-189,193-215,256-278,283-305
Y57A10C.4 7 30-52,65-87,125-147,167-189,193-215,256-278,283-305
GENEFINDER00000005462 5 56-78,98-120,124-146,187-209,214-236
Sequence
Target Sequence 
>C. ELEGANS:186447_AT
gaacaaagcaccagccttcttattccaatatctttcattattatttatcagtttttggca
atttccatttcactgggtatactgttcaatatactcgggttatacgtactaaatgcctcg
tggattttgtgtattctaattgggactattatgtactactatatcagaaaaatcaataca
aaatggctacaggaaatgcaaaatccgaataggaagcgagtttttacagtttctcaacaa
tttcaagtcagggagaatttgggagcaattgcgattggcaagcggttagtttttgtagtt
ctcgccacaattgttgtaatgggatttggaattgtggcattagtattagaaataacggtt
ttgtttttcatgcattttggggagaatacactgttttgctacccattatacatatttctt
gtggtgatgaatggtcatccagcgtggaagcaagagtttagaaaatattttccgaaaata
aaaattttcaagaaagtccgcccaggattagtgagtgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAAGCACCAGCCTTCTTATTC 148 353 493 Antisense
CAGCCTTCTTATTCCAATATCTTTC 423 203 504 Antisense
GGCAATTTCCATTTCACTGGGTATA 454 533 549 Antisense
CGGGTTATACGTACTAAATGCCTCG 322 235 588 Antisense
ATGCCTCGTGGATTTTGTGTATTCT 430 41 605 Antisense
GTAGTTCTCGCCACAATTGTTGTAA 221 457 787 Antisense
ACGGTTTTGTTTTTCATGCATTTTG 120 97 847 Antisense
TACACTGTTTTGCTACCCATTATAC 506 641 879 Antisense
GAATGGTCATCCAGCGTGGAAGCAA 24 333 921 Antisense
ATTTTCAAGAAAGTCCGCCCAGGAT 439 15 976 Antisense
GTCCGCCCAGGATTAGTGAGTGTGG 338 475 988 Antisense
Sequence Source Affymetrix Proprietary Database