[Home] | [Total List]

[186445_at]

Description T12B5.13 /REP_DB=WormBase Gene ID /WP=CE20070 /TR=Q9TZ25 /GB=AAC68937.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 8.8
(-1.9)
A 		36
(3)
A 		2.7
(-3)
A 		25
(1)
A 		33
B 2
(-2.9)
A 		1.4
(-3)
A 		32.3
(3)
A 		19.3
(0.5)
A 		31
C 3.5
(-2.8)
A 		2
(-3)
A 		3.1
(-2.9)
A 		58.6
(3)
A 		57
avr 4.8
(-3) 		13.1
(-1.3) 		12.7
(-1.4) 		34.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 38.9
(3)
A 		3.4
(-2.7)
A 		18.2
(-0.3)
A 		1.4
(-3)
A 		13.5
(-1.1)
A 		14.9
(-0.8)
A 		38
B 12.9
(3)
A 		4.5
(-1.2)
A 		3.2
(-1.8)
A 		0.9
(-3)
A 		10.7
(1.9)
A 		0.8
(-3)
A 		12
C 3.2
(-1.9)
A 		6.5
(-0.1)
A 		3.7
(-1.6)
A 		2.1
(-2.5)
A 		12.4
(3)
A 		1.1
(-3)
A 		11
avr 18.3
(3) 		4.8
(-1.8) 		8.4
(-0.5) 		1.5
(-3) 		12.2
(0.8) 		5.6
(-1.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.2
(-0.9)
A 		7.8
(3)
A 		0.7
(-3)
A 		3.7
(-0.5)
A 		7
B 0.7
(-2.7)
A 		0.3
(-3)
A 		7.5
(3)
A 		4.1
(0.2)
A 		7
C 1.1
(-2.7)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		9.9
(3)
A 		9
avr 1.7
(-3) 		2.9
(-1.3) 		3.1
(-1) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.2
(3)
A 		1.2
(-2.3)
A 		4
(0.2)
A 		0.4
(-3)
A 		4.1
(0.3)
A 		3.6
(-0.2)
A 		7
B 4.5
(3)
A 		1.5
(-1.2)
A 		0.8
(-2.2)
A 		0.2
(-3)
A 		4.3
(2.7)
A 		0.3
(-2.9)
A 		4
C 1.2
(-1.7)
A 		2
(-0.3)
A 		1
(-2)
A 		0.4
(-3)
A 		4
(3)
A 		0.4
(-3)
A 		4
avr 4.3
(3) 		1.6
(-1.1) 		1.9
(-0.6) 		0.3
(-3) 		4.1
(2.7) 		1.4
(-1.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8171
Sequence Type Exemplar sequence
Representative Public ID T12B5.13 NCBI
Target Description T12B5.13 /REP_DB=WormBase Gene ID /WP=CE20070 /TR=Q9TZ25 /GB=AAC68937.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064900 NCBI Caenorhabditis elegans T12B5.13 (T12B5.13) mRNA, complete cds. 11/11 None
T12B5.13 ENSEMBL cdna:known chromosome:CEL140:III:947835:949079:-1 gene:T12B5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:947834-949079(-) 93.52 100.0
Public Domain and Genome References
Gene Title
Ensembl T12B5.13
Entrez Gene 188450 Entrez gene
SwissProt Q9TZ25 EMBL-EBI
WormBase CE36506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68937 Hypothetical protein T12B5.13 [Caenorhabditis elegans] ref|NP_497301.2| T12B5.13 [Caenorhabditis elegans] 1.0E-140
blast AAC68783 Hypothetical protein F54D10.2 [Caenorhabditis elegans] ref|NP_494660.2| F54D10.2 [Caenorhabditis elegans] 9.0E-31
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-30
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:186445_AT
gaatcgaacatctgtttcattttcaatggatctgtattaatctcgacagctttccaacac
atattgcgattaaaattagagatgatctcataagaaaaagcacatttcaaggttgccgta
tacaatgtgacaaatcaaacaatttttttaaaaataaaaataaaattatttatgcatttc
tgcaaaaaaagtctttccaaaaacatagacaattaatgttccattttcattttgaaacaa
tcttaaattctgagttgactgcacggaacatcacttccctggatctatggaaatgtgcaa
aaaagttacatctgtatgattctttactcgaaaacagacaaatcgtacatctgtttcatt
taaaatggttcgagatccaactggacagctttccaacaaatattgcaactgaaattagag
atgatctaatgaaaaaatgttgcgacataggatgtgagaaatcaaagtcaaattcaatcg
aaattgcaaacgtgttcaaaccggactatgctggcggcaatgagttctctattaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAACATCTGTTTCATTTTCA 130 329 167 Antisense
GTATTAATCTCGACAGCTTTCCAAC 227 453 200 Antisense
GACAGCTTTCCAACACATATTGCGA 584 367 211 Antisense
CAAGGTTGCCGTATACAATGTGACA 567 183 274 Antisense
GAGTTGACTGCACGGAACATCACTT 603 395 418 Antisense
AACATCACTTCCCTGGATCTATGGA 541 137 433 Antisense
ACATCTGTATGATTCTTTACTCGAA 105 105 474 Antisense
ATCGTACATCTGTTTCATTTAAAAT 694 33 508 Antisense
CGAGATCCAACTGGACAGCTTTCCA 252 251 537 Antisense
AGCTTTCCAACAAATATTGCAACTG 381 79 553 Antisense
GGCGGCAATGAGTTCTCTATTAAGT 286 541 679 Antisense
Sequence Source Affymetrix Proprietary Database