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[186444_s_at]

Description ZK1055.7 /REP_DB=WormBase Gene ID /WP=CE18476 /TR=O76449 /GB=AAC19265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 06      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 50      6grp_total > 04      4grp_total > 0      6grp_high1_sub > De      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 400.8
(-1.1)
P 		341
(-3)
P 		474.7
(1.3)
P 		529.6
(3)
P 		189
B 395.4
(-3)
P 		405.3
(-2.7)
P 		516.2
(0.9)
P 		583.3
(3)
P 		188
C 389.3
(-2.8)
P 		385
(-3)
P 		507.7
(2.4)
P 		521.2
(3)
P 		136
avr 395.2
(-2.4) 		377.1
(-3) 		499.5
(1.4) 		544.7
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 843.4
(3)
P 		512.3
(-0.4)
P 		411.4
(-1.5)
P 		550.1
(-0.1)
P 		356.8
(-2.1)
P 		266.6
(-3)
P 		577
B 737
(3)
P 		519.5
(0)
P 		476.3
(-0.6)
P 		529.4
(0.1)
P 		356.1
(-2.2)
P 		301.4
(-3)
P 		436
C 773.5
(3)
P 		674
(1.7)
P 		529.2
(-0.3)
P 		444.4
(-1.4)
P 		325.9
(-3)
P 		333.7
(-2.9)
P 		448
avr 784.6
(3) 		568.6
(0.3) 		472.3
(-0.9) 		508
(-0.4) 		346.3
(-2.4) 		300.6
(-3) 		484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 145.9
(3)
P 		74
(-3)
P 		124.1
(1.2)
P 		77.5
(-2.7)
P 		72
B 126.1
(3)
P 		100.1
(-3)
P 		119.6
(1.5)
P 		124.3
(2.6)
P 		26
C 128.9
(-0.2)
P 		110.7
(-1.5)
P 		177
(3)
P 		87.9
(-3)
P 		89
avr 133.6
(2.1) 		94.9
(-3) 		140.2
(3) 		96.6
(-2.8) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 155.5
(1.6)
P 		182.2
(3)
P 		89.6
(-1.7)
P 		139.5
(0.8)
P 		107.7
(-0.8)
P 		64.9
(-3)
P 		117
B 256.5
(3)
P 		172.9
(-0.5)
P 		115.7
(-2.9)
P 		140.2
(-1.8)
P 		144.7
(-1.7)
P 		112.4
(-3)
P 		144
C 286.7
(3)
P 		205.6
(0.5)
P 		134.7
(-1.6)
P 		89.4
(-3)
P 		105.5
(-2.5)
P 		111.7
(-2.3)
P 		197
avr 232.9
(3) 		186.9
(1) 		113.3
(-2.3) 		123
(-1.8) 		119.3
(-2) 		96.3
(-3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186444_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12363
Sequence Type Exemplar sequence
Representative Public ID ZK1055.7 NCBI
Target Description ZK1055.7 /REP_DB=WormBase Gene ID /WP=CE18476 /TR=O76449 /GB=AAC19265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072279 NCBI Caenorhabditis elegans ZK1055.7 (ZK1055.7) mRNA, complete cds. 11/11 None
SNAP00000018292 ENSEMBL cdna:SNAP chromosome:CEL140:V:6605370:6607967:-1 11/11 None
GENEFINDER00000018298 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6605370:6607967:-1 11/11 None
ZK1055.7.2 ENSEMBL cdna:known chromosome:CEL140:V:6605331:6607971:-1 gene:ZK1055.7 11/11 None
ZK1055.7.1 ENSEMBL cdna:known chromosome:CEL140:V:6605331:6607969:-1 gene:ZK1055.7 11/11 None
ZK1055.7.3 ENSEMBL cdna:known chromosome:CEL140:V:6605370:6607971:-1 gene:ZK1055.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6605369-6607967(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1055.7
Entrez Gene 179051 Entrez gene
SwissProt O76449 EMBL-EBI
WormBase CE18476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19265 Hypothetical protein ZK1055.7 [Caenorhabditis elegans] ref|NP_504680.1| ZK1055.7 [Caenorhabditis elegans] 0.0
blast CAE71914 Hypothetical protein CBG18976 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186444_S_AT
aaacttgttcatgaatccgttccaagtaagaatgctgcagcttttctcacggcttctgct
gttaatacttctcaacttgcactcctggctggattttcatctgtctatctgaataatgca
tttgtcgcaacaagtcacctgaaaaacgtgtcaccaggtgaaagactcacttgctctttg
ggagttgacacggcaattcgtgtggagtacaagccggcaaagaagtaccatgaggaagga
ggttacatcaccaagcactctgcaaatgtcacggagcaaacaatctccatcaaaaatacg
agaaatgagcagccggtgctcctaaccgtgaagcatgcgattccacgtagcactgacgag
aagatccgtgtgaagctagtttcaccagcagctacgccatatgatgcggagaaggctggc
actgaagccgagaattctgagcctgtggaaggggcaaagttcaattccagcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTGTTCATGAATCCGTTCCAA 90 129 1141 Antisense
TAAGAATGCTGCAGCTTTTCTCACG 11 639 1167 Antisense
ACGGCTTCTGCTGTTAATACTTCTC 612 93 1189 Antisense
TGCACTCCTGGCTGGATTTTCATCT 231 577 1218 Antisense
AGACTCACTTGCTCTTTGGGAGTTG 189 67 1303 Antisense
GTTACATCACCAAGCACTCTGCAAA 64 447 1382 Antisense
GGTGCTCCTAACCGTGAAGCATGCG 688 499 1455 Antisense
GAAGCATGCGATTCCACGTAGCACT 423 341 1470 Antisense
TTTCACCAGCAGCTACGCCATATGA 569 671 1520 Antisense
GAAGCCGAGAATTCTGAGCCTGTGG 48 345 1564 Antisense
GGGGCAAAGTTCAATTCCAGCAATC 296 499 1591 Antisense
Sequence Source Affymetrix Proprietary Database