[Home] | [Total List]

[186443_at]

Description F42A10.7 /REP_DB=WormBase Gene ID /WP=CE01298 /TR=Q20312 /GB=AAA19078.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_high_8_8 > 40      6grp_highest_nonorm > 03      6grp_total > 24      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5400
1 2 3 4 range
A 6439.5
(3)
P 		1868.3
(-2.2)
P 		1822.3
(-2.3)
P 		1175.9
(-3)
A 		5264
B 4288.9
(3)
P 		1828.2
(-1.5)
P 		1582.5
(-2)
P 		1039.5
(-3)
P 		3249
C 6249.7
(3)
P 		1862.5
(-2.2)
P 		1421.2
(-2.8)
P 		1217.2
(-3)
M 		5033
avr 5659.4
(3) 		1853
(-2.1) 		1608.7
(-2.4) 		1144.2
(-3) 		4515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4582
1 2 3 4 5 6 range
A 5606.9
(3)
P 		3776
(0.5)
P 		3431.9
(-0)
P 		2081.8
(-1.9)
P 		1269.4
(-3)
P 		1263.2
(-3)
P 		4344
B 4984.3
(3)
P 		3839.9
(1.3)
P 		2964.5
(-0.1)
P 		1486.3
(-2.3)
P 		1441.4
(-2.4)
P 		1025.2
(-3)
P 		3959
C 4002.4
(3)
P 		3829.2
(2.6)
P 		3231.8
(1.4)
P 		1548.9
(-2)
P 		1465.1
(-2.2)
P 		1076.3
(-3)
P 		2926
avr 4864.5
(3) 		3815
(1.3) 		3209.4
(0.3) 		1705.7
(-2.1) 		1392
(-2.6) 		1121.6
(-3) 		3743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2173
1 2 3 4 range
A 2344.6
(3)
P 		405.6
(-2.4)
P 		476.4
(-2.2)
P 		172.1
(-3)
A 		2173
B 1367.7
(3)
P 		451.5
(-1.8)
P 		366.7
(-2.2)
P 		221.5
(-3)
P 		1146
C 2068.8
(3)
P 		535.5
(-1.9)
P 		495.3
(-2.1)
P 		205.2
(-3)
M 		1864
avr 1927
(3) 		464.2
(-2.1) 		446.1
(-2.1) 		199.6
(-3) 		1727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1427
1 2 3 4 5 6 range
A 1033.6
(1.2)
P 		1342.9
(3)
P 		747.4
(-0.5)
P 		528
(-1.7)
P 		383.1
(-2.6)
P 		307.5
(-3)
P 		1035
B 1734.3
(3)
P 		1278.1
(1)
P 		719.9
(-1.5)
P 		393.7
(-2.9)
P 		585.6
(-2.1)
P 		382.3
(-3)
P 		1352
C 1483.5
(3)
P 		1168.4
(1.4)
P 		822.5
(-0.4)
P 		311.5
(-3)
P 		474.1
(-2.2)
P 		360.3
(-2.8)
P 		1172
avr 1417.1
(3) 		1263.1
(2.1) 		763.3
(-0.7) 		411.1
(-2.7) 		480.9
(-2.3) 		350
(-3) 		1067
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7989
Sequence Type Exemplar sequence
Representative Public ID F42A10.7 NCBI
Target Description F42A10.7 /REP_DB=WormBase Gene ID /WP=CE01298 /TR=Q20312 /GB=AAA19078.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065940 NCBI Caenorhabditis elegans F42A10.7 (F42A10.7) mRNA, complete cds. 11/11 None
SNAP00000011652 ENSEMBL cdna:SNAP chromosome:CEL140:III:6177955:6178617:-1 11/11 None
GENEFINDER00000011654 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6177955:6178617:-1 11/11 None
F42A10.7.2 ENSEMBL cdna:known chromosome:CEL140:III:6177870:6178628:-1 gene:F42A10.7 11/11 None
F42A10.7.1 ENSEMBL cdna:known chromosome:CEL140:III:6177870:6178626:-1 gene:F42A10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6177953-6178616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A10.7
Entrez Gene 175875 Entrez gene
SwissProt Q20312 EMBL-EBI
WormBase CE01298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19078 Hypothetical protein F42A10.7 [Caenorhabditis elegans] ref|NP_498341.1| F42A10.7 [Caenorhabditis elegans] 1.0E-110
blast CAE73608 Hypothetical protein CBG21098 [Caenorhabditis briggsae] 1.0E-86
Sequence
Target Sequence 
>C. ELEGANS:186443_AT
aacttggcagactgtgctgcaccaaatggaaccgacaaagtgatgcactggtggcagtgc
tcatctggaccagttcaatttttgaatgctactccatacgactctaccggaaaacaatac
gagtacccaattcatttgagtcagccaattgttgtcaagactcaaatcaataacccaacg
agcacatatgtgtcgccaaatcttcgtaacaccgtcaatatctggaagtatggaggatgg
aacggatgcacatggagctcaatcccaactctcggtcttttgaaggaccttgacgcctgc
gcaaacggagtcccatgcccagtccgtccaggaaaccaagaacttgacgtcatcattgac
ttcaccaagttcgaccaaatcatcgccttactcaaggacaatcagccatatcaactcgag
tacatccttcacgacaaccaatccggagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTGGCAGACTGTGCTGCACCAA 288 137 85 Antisense
CACTGGTGGCAGTGCTCATCTGGAC 73 199 130 Antisense
TGAATGCTACTCCATACGACTCTAC 218 575 167 Antisense
TCGCCAAATCTTCGTAACACCGTCA 659 597 277 Antisense
TGCACATGGAGCTCAATCCCAACTC 84 577 331 Antisense
TCCCAACTCTCGGTCTTTTGAAGGA 27 599 347 Antisense
ACCTTGACGCCTGCGCAAACGGAGT 335 85 371 Antisense
AGTTCGACCAAATCATCGCCTTACT 614 61 452 Antisense
GGACAATCAGCCATATCAACTCGAG 206 527 480 Antisense
TCAACTCGAGTACATCCTTCACGAC 374 629 495 Antisense
CCTTCACGACAACCAATCCGGAGAC 634 269 510 Antisense
Sequence Source Affymetrix Proprietary Database