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[186441_at]

Description Y47H10A.2 /REP_DB=WormBase Gene ID /WP=CE24375 /TR=Q9U2B3 /GB=CAB60388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 23.1
(0.6)
A 		14.9
(-0.8)
A 		1.8
(-3)
A 		37.8
(3)
A 		36
B 33
(1.3)
A 		42.3
(3)
A 		15.8
(-1.8)
A 		9
(-3)
A 		33
C 34.2
(-1)
A 		33
(-1.1)
A 		13.5
(-3)
A 		75.7
(3)
A 		62
avr 30.1
(0.9) 		30.1
(0.9) 		10.4
(-3) 		40.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 46.8
(1.6)
A 		9.7
(-3)
A 		57.9
(3)
A 		39.5
(0.7)
A 		30.7
(-0.4)
A 		14.8
(-2.4)
A 		48
B 8.9
(-2.6)
A 		24.4
(2.6)
A 		25.5
(3)
A 		18.7
(0.7)
A 		8.8
(-2.6)
A 		7.6
(-3)
A 		18
C 4.4
(-2.3)
A 		15.1
(-0.2)
A 		0.7
(-3)
A 		31.2
(3)
A 		2.2
(-2.7)
A 		3.3
(-2.5)
A 		31
avr 20
(0.2) 		16.4
(-0.8) 		28
(2.5) 		29.8
(3) 		13.9
(-1.5) 		8.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.4
(3)
A 		3.2
(-0.9)
A 		0.5
(-3)
A 		5.5
(0.8)
A 		8
B 10.5
(3)
A 		10.4
(2.9)
A 		3.7
(-1.7)
A 		1.9
(-3)
A 		9
C 11.3
(1.9)
A 		9.5
(0.6)
A 		4.7
(-3)
A 		12.8
(3)
A 		8
avr 10.1
(3) 		7.7
(1) 		3
(-3) 		6.7
(0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.6
(0.4)
A 		3.5
(-3)
A 		12.6
(3)
A 		10
(1.3)
A 		9.3
(0.8)
A 		3.6
(-2.9)
A 		9
B 3.1
(-2.7)
A 		8.1
(3)
A 		6.2
(0.8)
A 		4.9
(-0.6)
A 		3.6
(-2.1)
A 		2.8
(-3)
A 		5
C 1.6
(-1.6)
A 		4.6
(1.3)
A 		0.2
(-3)
A 		6.3
(3)
A 		0.7
(-2.5)
A 		1.1
(-2.1)
A 		6
avr 4.4
(-0.5) 		5.4
(0.8) 		6.3
(2) 		7.1
(3) 		4.5
(-0.4) 		2.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1692
Sequence Type Exemplar sequence
Representative Public ID Y47H10A.2 NCBI
Target Description Y47H10A.2 /REP_DB=WormBase Gene ID /WP=CE24375 /TR=Q9U2B3 /GB=CAB60388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060652 NCBI Caenorhabditis elegans Y47H10A.2 (Y47H10A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12079992:12095952:-1 9/11 None
SNAP00000005126 ENSEMBL cdna:SNAP chromosome:CEL140:I:12093149:12095952:-1 10/11 None
Y47H10A.2 ENSEMBL cdna:known chromosome:CEL140:I:12093149:12095952:-1 gene:Y47H10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12093079-12095883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H10A.2
Entrez Gene 190007 Entrez gene
SwissProt Q9U2B3 EMBL-EBI
WormBase CE34511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60388 Hypothetical protein Y47H10A.2 [Caenorhabditis elegans] ref|NP_493053.2| Y47H10A.2 [Caenorhabditis elegans] 0.0
blast CAB60389 Hypothetical protein Y47H10A.1 [Caenorhabditis elegans] ref|NP_493052.1| CaLPain family member (clp-3) [Caenorhabditis elegans] 0.0
blast AAF36079 Calpain family protein 6 [Caenorhabditis elegans] ref|NP_500081.1| CaLPain family member (clp-6) [Caenorhabditis elegans] 0.0
blast CAB60388 Hypothetical protein Y47H10A.2 [Caenorhabditis elegans] ref|NP_493053.2| Y47H10A.2 [Caenorhabditis elegans] 8.0E-94
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 3.0E-73
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 9.30000019073486
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 1.8E-72
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 7.0E-25
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 2.4E-20
Sequence
Target Sequence 
>C. ELEGANS:186441_AT
aggaaatcgcgtcttacaactgaaaatatgcaatatttaatgaataatattgatttaaag
tatggattgctgattcgatgttggcatccttctggctttgacaaagagcttaaaaattcc
aattttcttatatttcagttaagcggaattcctcgactagacattttctacgctcaaaat
tacgaactagaagacgtaaagaatatatttcgtttttgtgaagttatacatcttcatata
cacgcattcactgcaaaatgtatcaaacagtttattcttcattggttggctggtcacgtg
ccaaaccttcgaagattccgatttgtttgtttttgctatcccgaagttgttgattacatt
ttgaatgaaattcaacatttcaaatgggatgcaaatcgacgagcagaaatattcatagat
ggactggaaaaaattaattgtggtgctgggtatgatatcgagagagatgatggtttactt
gctacactaatttgtattggcaaagaagttgaatttctagtatggcacgaccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAATCGCGTCTTACAACTGAAA 636 53 619 Antisense
GATTCGATGTTGGCATCCTTCTGGC 264 433 690 Antisense
GCATCCTTCTGGCTTTGACAAAGAG 544 305 702 Antisense
GGAATTCCTCGACTAGACATTTTCT 418 533 763 Antisense
ACATCTTCATATACACGCATTCACT 163 107 846 Antisense
TATTCTTCATTGGTTGGCTGGTCAC 102 663 891 Antisense
TCACGTGCCAAACCTTCGAAGATTC 10 627 912 Antisense
GATTCCGATTTGTTTGTTTTTGCTA 456 433 932 Antisense
GTTTTTGCTATCCCGAAGTTGTTGA 366 447 947 Antisense
GAGATGATGGTTTACTTGCTACACT 592 395 1082 Antisense
GAATTTCTAGTATGGCACGACCGAT 180 321 1129 Antisense
Sequence Source Affymetrix Proprietary Database