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[186439_at]

Description C01B12.8 /REP_DB=WormBase Gene ID /WP=CE07796 /TR=O17210 /GB=AAB70980.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 31      6grp_total > 97      4grp_total > 33      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 60.6
(-3)
A 		96.5
(0.9)
P 		99.9
(1.3)
A 		115.2
(3)
A 		55
B 62.6
(-3)
P 		132
(3)
A 		111.2
(1.2)
P 		88.4
(-0.8)
P 		69
C 44.5
(-3)
P 		108
(0.6)
P 		118.3
(1.2)
P 		149.8
(3)
P 		105
avr 55.9
(-3) 		112.2
(2.5) 		109.8
(2.2) 		117.8
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 111
(-2.3)
M 		60.6
(-3)
P 		102.5
(-2.4)
P 		176.2
(-1.3)
P 		443.8
(2.5)
P 		479.8
(3)
P 		419
B 65.4
(-3)
P 		80.9
(-2.8)
P 		152.8
(-1.8)
P 		260.2
(-0.3)
P 		381.5
(1.4)
P 		492.5
(3)
P 		427
C 55
(-3)
P 		97.1
(-2.6)
P 		110.4
(-2.4)
A 		133.8
(-2.2)
P 		362.6
(0.3)
P 		617
(3)
P 		562
avr 77.1
(-3) 		79.5
(-3) 		121.9
(-2.4) 		190.1
(-1.5) 		396
(1.2) 		529.8
(3) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 22.1
(0.4)
A 		20.9
(-0.4)
P 		26.1
(3)
A 		16.9
(-3)
A 		9
B 20
(-2.5)
P 		32.6
(3)
A 		25.8
(0)
P 		18.8
(-3)
P 		14
C 14.7
(-3)
P 		31.1
(0.7)
P 		41.2
(3)
P 		25.3
(-0.6)
P 		27
avr 18.9
(-3) 		28.2
(1.6) 		31
(3) 		20.3
(-2.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 20.5
(-3)
M 		21.6
(-2.9)
P 		22.3
(-2.9)
P 		44.7
(-1.7)
P 		133.9
(3)
P 		116.8
(2.1)
P 		113
B 22.7
(-3)
P 		26.9
(-2.8)
P 		37.1
(-2.5)
P 		68.9
(-1.3)
P 		155
(1.9)
P 		183.6
(3)
P 		161
C 20.4
(-3)
P 		29.6
(-2.7)
P 		28.1
(-2.8)
A 		26.9
(-2.8)
P 		117.3
(0.1)
P 		206.5
(3)
P 		186
avr 21.2
(-3) 		26
(-2.8) 		29.2
(-2.7) 		46.8
(-2) 		135.4
(1.6) 		169
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4926
Sequence Type Exemplar sequence
Representative Public ID C01B12.8 NCBI
Target Description C01B12.8 /REP_DB=WormBase Gene ID /WP=CE07796 /TR=O17210 /GB=AAB70980.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061235 NCBI Caenorhabditis elegans C01B12.8 (C01B12.8) mRNA, complete cds. 11/11 None
SNAP00000043179 ENSEMBL cdna:SNAP chromosome:CEL140:II:24771:25377:1 11/11 None
GENEFINDER00000043187 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:24771:25381:1 11/11 None
C01B12.8 ENSEMBL cdna:known chromosome:CEL140:II:23881:25381:1 gene:C01B12.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:24770-25381(+) 88.96 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B12.8
Entrez Gene 3565099 Entrez gene
SwissProt O17210 EMBL-EBI
WormBase CE07796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70980 Hypothetical protein C01B12.8 [Caenorhabditis elegans] ref|NP_493636.1| C01B12.8 [Caenorhabditis elegans] 2.0E-52
blast AAB70980 Hypothetical protein C01B12.8 [Caenorhabditis elegans] ref|NP_493636.1| C01B12.8 [Caenorhabditis elegans] 5.0E-52
blast CAE62834 Hypothetical protein CBG07013 [Caenorhabditis briggsae] 7.0E-25
blast CAE62834 Hypothetical protein CBG07013 [Caenorhabditis briggsae] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:186439_AT
aattgcgcgatgaacagaagacagagcttataaaacaggaaaaaaagcgccgacgcattg
ctcggttacgacaggttcgccagcaaagtgcagcaaatgcaaagattacaagagacgtgg
tgaatcaacggaagcaagagttcattcaagaaattagggaagaattgcacgagcaggtgg
atgcgctaatgacagaagtaactgaaaaatcgttaaaattacctgtctccgcaaaaagga
aaacttctacgcctcgctcacttaaaaagtcttctcgttgtcgtgaaatgacggaaagcg
atctggagttggcgaaaaaaagaaatgcagatgcaatgaagcatcttcgagaagcgaaga
aaaagaaggaaaaggagcaagaggaaaagttggcaaagaagaaagaagccgcacgaaaag
ctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCGCGATGAACAGAAGACAGA 262 179 20 Antisense
AAAAAGCGCCGACGCATTGCTCGGT 616 129 61 Antisense
ATTGCTCGGTTACGACAGGTTCGCC 305 7 76 Antisense
GACAGGTTCGCCAGCAAAGTGCAGC 144 369 89 Antisense
GAGACGTGGTGAATCAACGGAAGCA 529 393 131 Antisense
ATTGCACGAGCAGGTGGATGCGCTA 266 5 183 Antisense
TCGTTAAAATTACCTGTCTCCGCAA 211 603 229 Antisense
TACGCCTCGCTCACTTAAAAAGTCT 556 647 267 Antisense
AAAAGTCTTCTCGTTGTCGTGAAAT 39 133 284 Antisense
GACGGAAAGCGATCTGGAGTTGGCG 657 373 309 Antisense
GAAAGAAGCCGCACGAAAAGCTAAT 565 359 420 Antisense
Sequence Source Affymetrix Proprietary Database