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[186438_s_at]

Description M01E11.4 /REP_DB=WormBase Gene ID /WP=CE12294 /TR=P91397 /GB=AAB37827.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 55      6grp_total > 84      4grp_total > 60      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1573
1 2 3 4 range
A 1455.4
(1.9)
P 		1588.9
(2.5)
P 		1701.6
(3)
P 		300.3
(-3)
P 		1401
B 1379.9
(1.8)
P 		1608.5
(3)
P 		1550.7
(2.7)
P 		440
(-3)
P 		1169
C 1555
(1.7)
P 		1573.5
(1.8)
P 		1873.1
(3)
P 		391.4
(-3)
P 		1482
avr 1463.4
(1.9) 		1590.3
(2.5) 		1708.5
(3) 		377.2
(-3) 		1331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1816
1 2 3 4 5 6 range
A 675.2
(-3)
P 		1474.9
(-0.4)
P 		1803.4
(0.7)
P 		1924.6
(1.1)
P 		2490.5
(3)
P 		1907.6
(1.1)
P 		1815
B 1160
(-3)
P 		1507.8
(-1.4)
P 		1762.5
(-0.3)
P 		2003.2
(0.8)
P 		2490.9
(3)
P 		1848
(0.1)
P 		1331
C 1251.8
(-3)
P 		1461.9
(-2)
P 		1787.9
(-0.4)
P 		1945.1
(0.4)
P 		2469.6
(3)
P 		1894.3
(0.2)
P 		1218
avr 1029
(-3) 		1481.5
(-1.1) 		1784.6
(0.1) 		1957.6
(0.8) 		2483.7
(3) 		1883.3
(0.5) 		1455
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 529.9
(3)
P 		344.9
(0.7)
P 		444.8
(1.9)
P 		44
(-3)
P 		486
B 440
(3)
P 		397.3
(2.3)
P 		359.3
(1.6)
P 		93.8
(-3)
P 		346
C 514.7
(1.6)
P 		452.4
(1)
P 		652.8
(3)
P 		66
(-3)
P 		587
avr 494.9
(3) 		398.2
(1.6) 		485.6
(2.9) 		67.9
(-3) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 124.5
(-3)
P 		524.5
(0.8)
P 		392.8
(-0.4)
P 		488.1
(0.5)
P 		751.5
(3)
P 		464.5
(0.3)
P 		627
B 403.6
(-3)
P 		501.9
(-2)
P 		428
(-2.8)
P 		530.6
(-1.7)
P 		1012
(3)
P 		689.1
(-0.2)
P 		608
C 464
(-1.9)
P 		446.1
(-2.2)
P 		455
(-2.1)
P 		391.2
(-3)
P 		799.1
(3)
P 		634.1
(0.6)
P 		408
avr 330.7
(-3) 		490.8
(-1.2) 		425.3
(-1.9) 		470
(-1.4) 		854.2
(3) 		595.9
(0) 		524
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186438_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1164
Sequence Type Exemplar sequence
Representative Public ID M01E11.4 NCBI
Target Description M01E11.4 /REP_DB=WormBase Gene ID /WP=CE12294 /TR=P91397 /GB=AAB37827.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026404, NM_059228, NM_059229
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M01E11.4c ENSEMBL cdna:known chromosome:CEL140:I:5566357:5570080:-1 gene:M01E11.4 A 
M01E11.4b ENSEMBL cdna:known chromosome:CEL140:I:5568360:5570080:-1 gene:M01E11.4 A 
M01E11.4a ENSEMBL cdna:known chromosome:CEL140:I:5568637:5570082:-1 gene:M01E11.4 None
NM_059229 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) (pqn-52) mRNA, complete cds. None
NM_059228 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) (pqn-52) mRNA, complete cds. None
SNAP00000002371 ENSEMBL cdna:SNAP chromosome:CEL140:I:5568637:5570080:-1 None
NM_001026404 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) (pqn-52) mRNA, complete cds. None
GENEFINDER00000002386 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5568637:5570080:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5568636-5570080(-) 100.0 100.0
Public Domain and Genome References
Ensembl M01E11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021575 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 0.0
blast AAK77614 Hypothetical protein M01E11.4b [Caenorhabditis elegans] ref|NP_491630.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 1.0E-127
blast CAE68912 Hypothetical protein CBG14891 [Caenorhabditis briggsae] 1.0E-125
blast AAK77613 Hypothetical protein M01E11.4a [Caenorhabditis elegans] ref|NP_491629.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:186438_S_AT
gtcgaacagtttatccgaggccagcattcgattctgacatgcttcaattgctgataggac
atcaattacacaatttatctattcattttttaaacaaaaatgtgaatccatttttcctca
gatctgaaattgataaaagcatgattgtggtgattacacggtcaaaatacggagagaacg
ttcactatgaagcgttcggacatgcgttcatcaaaccagatggcaaggtctgtggatggt
ttgttggatcacacaaagaagtcgtcgaggtgtgtggaggattccgtgtactcagtagat
cacgattcaatccacatcagccaattcctttcgaatgggttcaaggagaacaataccgta
acagagatgttcttgggttccaccatcacaagattgcaaagtatgaagctaacgcggatg
aggttcttttcggagatgctgatgttaagggaaaaaaattcaatggagtttctatcaata
atgaacaacgagtggaggtcgacacccccgaaaccttccatcgtaaagtgtggcttctgc
gcaaaaagtcaactcagcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAACAGTTTATCCGAGGCCAGC 57 471 317 Antisense
GAGGCCAGCATTCGATTCTGACATG 21 407 333 Antisense
GAATCCATTTTTCCTCAGATCTGAA 122 331 420 Antisense
TGAAGCGTTCGGACATGCGTTCATC 2 575 504 Antisense
GAGGATTCCGTGTACTCAGTAGATC 503 403 593 Antisense
CACATCAGCCAATTCCTTTCGAATG 573 195 629 Antisense
AACAGAGATGTTCTTGGGTTCCACC 94 135 676 Antisense
GGGTTCCACCATCACAAGATTGCAA 79 497 691 Antisense
ACGCGGATGAGGTTCTTTTCGGAGA 494 83 728 Antisense
CATCGTAAAGTGTGGCTTCTGCGCA 291 211 835 Antisense
TGCGCAAAAAGTCAACTCAGCCTCC 97 585 854 Antisense
Sequence Source Affymetrix Proprietary Database