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[186437_at]

Description F59H6.10 /REP_DB=WormBase Gene ID /WP=CE20916 /TR=Q9N5P9 /GB=AAF39858.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 04      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 21.4
(2.5)
A 		5.3
(-3)
A 		7.2
(-2.4)
A 		23
(3)
A 		18
B 6.1
(2.4)
A 		3.2
(-3)
A 		6.3
(2.8)
A 		6.4
(3)
A 		3
C 6.7
(-2.5)
A 		5.7
(-2.7)
A 		3
(-3)
A 		51.5
(3)
A 		49
avr 11.4
(-1.2) 		4.7
(-3) 		5.5
(-2.8) 		27
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 6
(-2.7)
A 		2.5
(-3)
A 		28.3
(-0.4)
A 		29.2
(-0.4)
A 		48.1
(1.5)
A 		63.2
(3)
A 		61
B 2.4
(-3)
A 		2
(-3)
A 		12.3
(-2.1)
A 		10.6
(-2.2)
A 		68.7
(2.8)
A 		70.5
(3)
A 		69
C 8.8
(-2.7)
A 		4.3
(-3)
A 		38.9
(-0.9)
A 		11.2
(-2.6)
A 		37.8
(-0.9)
A 		101
(3)
P 		97
avr 5.7
(-2.8) 		2.9
(-3) 		26.5
(-1.1) 		17
(-1.9) 		51.5
(0.9) 		78.2
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.8
(3)
A 		1.2
(-3)
A 		1.9
(-2.4)
A 		3.4
(-1)
A 		7
B 1.9
(3)
A 		0.8
(-3)
A 		1.5
(0.8)
A 		1.4
(0.3)
A 		1
C 2.2
(-2.1)
A 		1.6
(-2.6)
A 		1.1
(-3)
A 		8.7
(3)
A 		8
avr 4
(2.1) 		1.2
(-3) 		1.5
(-2.5) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		0.9
(-3)
A 		6.2
(-0.8)
A 		7.4
(-0.3)
A 		14.5
(2.6)
A 		15.4
(3)
A 		15
B 0.8
(-3)
A 		0.7
(-3)
A 		3
(-2.5)
A 		2.8
(-2.5)
A 		27.9
(3)
A 		26.3
(2.6)
A 		27
C 3.3
(-2.6)
A 		1.3
(-3)
A 		9.9
(-1.4)
A 		2.3
(-2.8)
A 		12.2
(-1)
A 		33.8
(3)
P 		33
avr 1.7
(-2.8) 		1
(-3) 		6.4
(-1.7) 		4.2
(-2.2) 		18.2
(1.3) 		25.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4888
Sequence Type Exemplar sequence
Representative Public ID F59H6.10 NCBI
Target Description F59H6.10 /REP_DB=WormBase Gene ID /WP=CE20916 /TR=Q9N5P9 /GB=AAF39858.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061756 NCBI Caenorhabditis elegans F59H6.10 (F59H6.10) mRNA, complete cds. 11/11 A 
SNAP00000002429 ENSEMBL cdna:SNAP chromosome:CEL140:II:2029326:2030464:-1 9/11 None
GENEFINDER00000002446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2029326:2030464:-1 9/11 None
F59H6.10 ENSEMBL cdna:known chromosome:CEL140:II:2029326:2030672:-1 gene:F59H6.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2029324-2030671(-) 97.25 100.0
chrII:1916798-1918136(-) 88.28 90.11
Public Domain and Genome References
Gene Title
Gene Symbol bath-3
Ensembl F59H6.10
Entrez Gene 186649 Entrez gene
WormBase CE39104 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 0.0
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-169
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-165
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 1.0E-165
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.0E-39
Pfam IPR002083 EMBL-EBI MATH 3.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-24
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.5E-10
Sequence
Target Sequence 
>C. ELEGANS:186437_AT
gaggcaactgttaaggtcaccaatatgactggaattctcaagaaaaagctgagaagcttc
gagaaatccgaggaagaattttccgatgtagttctcgctgttgaagatgaaaagttccat
gttttgaagaaattcctggcctcccattccacctatttcaatgctcttcttctcgggaat
ttcaaggaagccgagatttcagaagtcgcgctcaaggacattgattccacggattttcag
aatcttttggaggttctgtatggcgaaccggctattgatggtgggaaattcaagaatttt
caagaaattttcaagaaaaataagctaaaaattcaaatttcagaggacaccatcgaagga
attctccatttggcccatatgtacgatatgccatttccaacccgaaaatgcgaggaattc
ctcatcgatttttctgaaaaaccaattaaggagaagctcaaagtcgctaaaaagtatcag
ctggagaatttgaagaagtcctgcctcatgaaaatcagtacaatcgatgaaatcaaagcg
gcgttggctggcgattcgactgaaatggatgtggctgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCAACTGTTAAGGTCACCAATA 479 405 487 Antisense
GGAGGTTCTGTATGGCGAACCGGCT 107 515 735 Antisense
GGCGAACCGGCTATTGATGGTGGGA 313 537 748 Antisense
AATTCAAATTTCAGAGGACACCATC 481 173 816 Antisense
AATTTCAGAGGACACCATCGAAGGA 392 171 822 Antisense
AATTCTCCATTTGGCCCATATGTAC 261 177 846 Antisense
GGCCCATATGTACGATATGCCATTT 286 543 858 Antisense
CCTGCCTCATGAAAATCAGTACAAT 155 267 986 Antisense
ATCAAAGCGGCGTTGGCTGGCGATT 153 25 1018 Antisense
GTTGGCTGGCGATTCGACTGAAATG 589 435 1029 Antisense
TCGACTGAAATGGATGTGGCTGTGC 139 601 1042 Antisense
Sequence Source Affymetrix Proprietary Database