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[186436_at]

Description Y43F11A.2 /REP_DB=WormBase Gene ID /WP=CE21917 /TR=Q9U2H0 /GB=CAB55039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 31.1
(-1.3)
A 		87
(3)
A 		49.1
(0.1)
A 		9.6
(-3)
A 		77
B 68.5
(1.1)
A 		43.3
(-3)
A 		61
(-0.1)
A 		80.5
(3)
P 		37
C 38.6
(-3)
A 		50.4
(-2.2)
A 		58.9
(-1.6)
A 		125.5
(3)
A 		87
avr 46.1
(-3) 		60.2
(0.3) 		56.3
(-0.6) 		71.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 8
(-3)
A 		33.2
(-2.4)
A 		30.2
(-2.5)
A 		68.3
(-1.7)
A 		165.9
(0.5)
P 		278.5
(3)
P 		271
B 6.7
(-2.9)
A 		4.7
(-3)
A 		33.5
(-2)
A 		41.6
(-1.7)
P 		168.2
(2.6)
P 		179.2
(3)
P 		175
C 8.3
(-3)
A 		16.8
(-2.7)
A 		28
(-2.4)
A 		56.3
(-1.5)
A 		195.3
(3)
P 		161.6
(1.9)
P 		187
avr 7.7
(-3) 		18.2
(-2.7) 		30.6
(-2.3) 		55.4
(-1.6) 		176.5
(2.1) 		206.4
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.3
(0.4)
A 		18.9
(3)
A 		12.8
(0.9)
A 		1.4
(-3)
A 		18
B 21.8
(3)
A 		10.7
(-3)
A 		14.1
(-1.2)
A 		17.2
(0.5)
P 		11
C 12.8
(-3)
A 		14.5
(-1.8)
A 		20.5
(2.5)
A 		21.2
(3)
A 		8
avr 15.3
(1.8) 		14.7
(0.4) 		15.8
(3) 		13.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 1.5
(-3)
A 		11.8
(-2.1)
A 		6.6
(-2.5)
A 		17.3
(-1.6)
A 		50.1
(1.4)
P 		67.8
(3)
P 		66
B 2.3
(-2.9)
A 		1.6
(-3)
A 		8.1
(-2.4)
A 		11
(-2.2)
P 		68.3
(3)
P 		66.8
(2.9)
P 		67
C 3.1
(-3)
A 		5.1
(-2.8)
A 		7.1
(-2.6)
A 		11.3
(-2.2)
A 		63.2
(3)
P 		54.1
(2.1)
P 		60
avr 2.3
(-3) 		6.2
(-2.6) 		7.3
(-2.5) 		13.2
(-1.9) 		60.5
(2.8) 		62.9
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3663
Sequence Type Exemplar sequence
Representative Public ID Y43F11A.2 NCBI
Target Description Y43F11A.2 /REP_DB=WormBase Gene ID /WP=CE21917 /TR=Q9U2H0 /GB=CAB55039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064175(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064175 NCBI Caenorhabditis elegans Y43F11A.2 (Y43F11A.2) mRNA, complete cds. 10/11 None
SNAP00000033621 ENSEMBL cdna:SNAP chromosome:CEL140:II:12114046:12119289:-1 10/11 None
GENEFINDER00000033630 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12114046:12116310:-1 11/11 None
Y43F11A.2 ENSEMBL cdna:known chromosome:CEL140:II:12114894:12116310:-1 gene:Y43F11A.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12114042-12116307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F11A.2
Entrez Gene 189891 Entrez gene
SwissProt Q9U2H0 EMBL-EBI
WormBase CE36412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55039 Hypothetical protein Y43F11A.2 [Caenorhabditis elegans] ref|NP_496576.2| Y43F11A.2 [Caenorhabditis elegans] 3.0E-72
blast CAB55039 Hypothetical protein Y43F11A.2 [Caenorhabditis elegans] ref|NP_496576.2| Y43F11A.2 [Caenorhabditis elegans] 2.0E-60
blast CAB55040 Hypothetical protein Y43F11A.3 [Caenorhabditis elegans] ref|NP_496577.1| Y43F11A.3 [Caenorhabditis elegans] 2.0E-51
blast CAB55039 Hypothetical protein Y43F11A.2 [Caenorhabditis elegans] ref|NP_496576.2| Y43F11A.2 [Caenorhabditis elegans] 3.0E-43
blast NP_498615 F56C9.2 [Caenorhabditis elegans] 5.0E-36
blast NP_498615 F56C9.2 [Caenorhabditis elegans] 1.0E-35
blast AAB00700 Hypothetical protein C34D4.5 [Caenorhabditis elegans] ref|NP_501121.1| C34D4.5 [Caenorhabditis elegans] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:186436_AT
gtcagccgaaacttcaacaatatccacttgctcaaccacgtcctcgtcaactgtccaaca
ggacactaaatcattgaaagaagtcctacgcctgcttagatgtctcatacttttcatgga
atcaccggtttttgctgggctcaaagagcaaattagacagagaattgagctgttgggaga
tggggaacagaaaatcccaatctcaaaaatcaagtggagcctcgaaacggcgatttcaat
gatttgccaaaatgctcctgacgcaactgaagaaacgacgagcctcgaagaatttttgaa
tcttttgaggattatgattctcggattacaagaaccactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGCCGAAACTTCAACAATATCC 393 457 15 Antisense
TCAACAATATCCACTTGCTCAACCA 642 629 28 Antisense
GTCCTCGTCAACTGTCCAACAGGAC 190 473 54 Antisense
CATTGAAAGAAGTCCTACGCCTGCT 270 215 86 Antisense
TACGCCTGCTTAGATGTCTCATACT 676 647 101 Antisense
GTCTCATACTTTTCATGGAATCACC 593 469 116 Antisense
TGGAATCACCGGTTTTTGCTGGGCT 51 547 131 Antisense
GGAGCCTCGAAACGGCGATTTCAAT 488 521 230 Antisense
GATTTGCCAAAATGCTCCTGACGCA 38 429 255 Antisense
GCAACTGAAGAAACGACGAGCCTCG 253 319 277 Antisense
GATTCTCGGATTACAAGAACCACTG 45 431 330 Antisense
Sequence Source Affymetrix Proprietary Database