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[186435_at]

Description R07C3.10 /REP_DB=WormBase Gene ID /WP=CE12540 /TR=O16766 /GB=AAB66239.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 6.2
(-3)
A 		11.2
(2.2)
A 		8.5
(-0.6)
A 		12
(3)
A 		6
B 24.1
(2.6)
A 		25.4
(3)
A 		6.2
(-3)
A 		11.7
(-1.3)
A 		19
C 22.1
(-0.9)
A 		49.5
(3)
A 		7.7
(-3)
A 		21.6
(-1)
A 		42
avr 17.5
(-0.2) 		28.7
(3) 		7.5
(-3) 		15.1
(-0.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 8.5
(-2.1)
A 		33.9
(2.2)
A 		20.3
(-0.1)
A 		3.5
(-3)
A 		38.7
(3)
A 		4.7
(-2.8)
A 		35
B 6.3
(-2.7)
A 		29.9
(-0.7)
A 		74.4
(3)
A 		15.3
(-1.9)
A 		28.4
(-0.8)
A 		2.1
(-3)
A 		72
C 16.2
(-2.3)
A 		71.6
(3)
A 		28.1
(-1.2)
A 		32.2
(-0.8)
A 		9.4
(-3)
A 		18.7
(-2.1)
A 		62
avr 10.3
(-2.7) 		45.1
(3) 		40.9
(2.3) 		17
(-1.6) 		25.5
(-0.2) 		8.5
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.3
(2)
A 		2.4
(3)
A 		2.2
(1)
A 		1.8
(-3)
A 		1
B 7.7
(3)
A 		6.3
(1.7)
A 		1.4
(-3)
A 		2.5
(-2)
A 		6
C 7.3
(-0.6)
A 		14.2
(3)
A 		2.7
(-3)
A 		3.6
(-2.5)
A 		12
avr 5.8
(1) 		7.6
(3) 		2.1
(-3) 		2.6
(-2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.6
(-2.6)
A 		12.1
(3)
A 		4.4
(-1.1)
A 		0.9
(-3)
A 		11.7
(2.8)
A 		1.2
(-2.8)
A 		11
B 2.2
(-2.5)
A 		10
(0.2)
A 		18.1
(3)
A 		4.1
(-1.9)
A 		11.5
(0.7)
A 		0.8
(-3)
A 		17
C 6
(-2)
A 		21.9
(3)
A 		7.1
(-1.7)
A 		6.5
(-1.9)
A 		3
(-3)
A 		6.3
(-2)
A 		19
avr 3.3
(-2.7) 		14.7
(3) 		9.9
(0.6) 		3.8
(-2.5) 		8.7
(-0) 		2.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4892
Sequence Type Exemplar sequence
Representative Public ID R07C3.10 NCBI
Target Description R07C3.10 /REP_DB=WormBase Gene ID /WP=CE12540 /TR=O16766 /GB=AAB66239.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061446 NCBI Caenorhabditis elegans R07C3.10 (R07C3.10) mRNA, complete cds. 11/11 None
SNAP00000022233 ENSEMBL cdna:SNAP chromosome:CEL140:II:910205:911598:1 11/11 None
GENEFINDER00000022257 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:910241:911933:1 10/11 None
R07C3.10 ENSEMBL cdna:known chromosome:CEL140:II:909890:911598:1 gene:R07C3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:909022-911597(+) 98.22 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.10
Entrez Gene 187669 Entrez gene
SwissProt O16766 EMBL-EBI
WormBase CE32706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66239 Hypothetical protein R07C3.10 [Caenorhabditis elegans] ref|NP_493847.2| R07C3.10 [Caenorhabditis elegans] 0.0
blast AAB66239 Hypothetical protein R07C3.10 [Caenorhabditis elegans] ref|NP_493847.2| R07C3.10 [Caenorhabditis elegans] 1.0E-169
blast AAB66239 Hypothetical protein R07C3.10 [Caenorhabditis elegans] ref|NP_493847.2| R07C3.10 [Caenorhabditis elegans] 1.0E-136
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 2.0E-34
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 9.0E-33
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 4.0E-20
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 4.0E-20
Sequence
Target Sequence 
>C. ELEGANS:186435_AT
taaagttgctcggcggacgtggtcaaatcgcggtcaacaaattccacatcagcgctaagg
ggattcttcggatccctaggcttaaattgaaaatgttgaatctcaaaattggaggcaaca
aaattgacgaaatttttgcgactctcctggagaacggaatcatagacgtttcgagtttcc
cactgcaatctttccatactgatgggtgcacctatcgccgatatccggaaatgcgatctg
caaaaatgatcattctcgagtgtacttattttggacctcgtttgctatggtcaggagccg
acgctcacccaagagttcattacaccaaaatgtctgaaaacgcctacaatggagttacga
ggcttgcaactgattggattctgaacgccccgccaattggaaccatcgtttcgtttggat
attcagcatggaatttttgtaatttgcaaattaagaaaatcaagaaaattgaaggtgcta
tcgttgctaagcaaccggagctcggtgtcatttttcgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGTTGCTCGGCGGACGTGGTCA 153 641 572 Antisense
TTCTTCGGATCCCTAGGCTTAAATT 28 689 635 Antisense
AATTTTTGCGACTCTCCTGGAGAAC 265 175 702 Antisense
CCACTGCAATCTTTCCATACTGATG 270 273 751 Antisense
CATACTGATGGGTGCACCTATCGCC 708 213 766 Antisense
GTACTTATTTTGGACCTCGTTTGCT 201 455 833 Antisense
GCTATGGTCAGGAGCCGACGCTCAC 656 301 855 Antisense
CGACGCTCACCCAAGAGTTCATTAC 629 251 870 Antisense
AACTGATTGGATTCTGAACGCCCCG 691 141 939 Antisense
CCCGCCAATTGGAACCATCGTTTCG 651 257 960 Antisense
GGAGCTCGGTGTCATTTTTCGAATC 336 521 1068 Antisense
Sequence Source Affymetrix Proprietary Database