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[186434_at]

Description F47C10.1 /REP_DB=WormBase Gene ID /WP=CE17834 /TR=O01559 /GB=AAB52271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 39      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 31.6
(-1.1)
A
26.4
(-3)
A
30.8
(-1.4)
A
43.2
(3)
A
17
B 44.9
(3)
A
30.8
(-0.8)
A
22.4
(-3)
A
38.4
(1.3)
A
23
C 66.8
(3)
A
5.9
(-3)
A
37
(0.1)
A
14.3
(-2.2)
A
61
avr 47.8
(3)
21
(-3)
30.1
(-1)
32
(-0.5)
27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 7.8
(-2.6)
A
37.8
(3)
A
32
(1.9)
A
24.3
(0.5)
A
22.6
(0.1)
A
5.9
(-3)
A
32
B 30.6
(1.6)
A
38.4
(3)
A
29.8
(1.4)
A
21.1
(-0.1)
A
5.4
(-3)
A
22.6
(0.1)
A
33
C 20
(-0.4)
A
19.1
(-0.6)
A
32.4
(1.9)
A
38.3
(3)
A
6
(-3)
A
17.5
(-0.9)
A
32
avr 19.5
(-0.6)
31.8
(3)
31.4
(2.9)
27.9
(1.9)
11.3
(-3)
15.3
(-1.8)
21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.5
(3)
A
5.7
(-3)
A
8
(-0.6)
A
6.3
(-2.4)
A
6
B 14.3
(3)
A
7.6
(-1.4)
A
5.2
(-3)
A
8.2
(-1)
A
9
C 22.1
(3)
A
1.7
(-3)
A
12.9
(0.3)
A
2.4
(-2.8)
A
20
avr 16
(3)
5
(-3)
8.7
(-1)
5.6
(-2.7)
11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.4
(-3)
A
13.4
(3)
A
7
(-0.2)
A
6.2
(-0.6)
A
6.8
(-0.3)
A
1.4
(-3)
A
12
B 10.6
(1.8)
A
12.8
(3)
A
7.2
(-0.2)
A
5.6
(-1.1)
A
2.2
(-3)
A
8.4
(0.5)
A
11
C 7.4
(2.2)
A
5.8
(0.7)
A
8.3
(3)
A
7.7
(2.4)
A
1.9
(-3)
A
5.9
(0.8)
A
6
avr 6.5
(-0.5)
10.7
(3)
7.5
(0.3)
6.5
(-0.5)
3.6
(-3)
5.2
(-1.6)
7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15770
Sequence Type Exemplar sequence
Representative Public ID F47C10.1 NCBI
Target Description F47C10.1 /REP_DB=WormBase Gene ID /WP=CE17834 /TR=O01559 /GB=AAB52271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071660(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_071660 NCBI Caenorhabditis elegans F47C10.1 (F47C10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021962 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3840275:3845933:-1 10/11 None
F47C10.1 ENSEMBL cdna:known chromosome:CEL140:V:3844458:3846922:-1 gene:F47C10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021955 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3844457-3846922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-185
Ensembl F47C10.1
Entrez Gene 185907 Entrez gene
SwissProt O01559 EMBL-EBI
WormBase CE17834 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52271 Hypothetical protein F47C10.1 [Caenorhabditis elegans] ref|NP_504061.1| F47C10.1 [Caenorhabditis elegans] 0.0
blast AAB52270 Udp-glucuronosyltransferase protein 32 [Caenorhabditis elegans] ref|NP_504060.2| F47C10.6 [Caenorhabditis elegans] 0.0
blast CAE71586 Hypothetical protein CBG18543 [Caenorhabditis briggsae] 0.0
blast CAE62451 Hypothetical protein CBG06543 [Caenorhabditis briggsae] 0.0
blast CAE58113 Hypothetical protein CBG01199 [Caenorhabditis briggsae] 2.0E-83
blast CAE58112 Hypothetical protein CBG01198 [Caenorhabditis briggsae] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.9E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 7.5E-14
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-43
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.3E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.8E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021962 1 789-811
Sequence
Target Sequence
>C. ELEGANS:186434_AT
catctcaacttgtccatcaagccgatcaagttctatcacaatggacatttttcggaatct
ggacatctgtagagtttctgaatagtcttgatttcatgtcacttctaggcatcgaagaca
aactaattgtgctcaaaagttttgctctgagctcttacctcctttcttcagcttttcatt
cttgctctagatgctgtgatcgactggtaaaccccgacggaacagagctgtattcttcta
gaataagagaaatgtcggaattttccaaagactacgcggaccggatacaagaaatgctcg
tcaccaaaatatgtggattatgcttaactccagaggagtacatcctaactcagatcatac
ttttttgcacaccaagactaaccggattatcacagtttgcgcaagagatcataggcgagc
aacagaaaaagtactgtaattccctattggagtactgtaagctgacaagaaatactcggg
gacctgcgaggtttcaagaaattatatcgattgggagtgtgcttgcacaatgttttgagg
atgtgcaacacctgtcaaccgt


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CATCTCAACTTGTCCATCAAGCCGA 265 213 515 Antisense
GATTTCATGTCACTTCTAGGCATCG 343 427 604 Antisense
AAGTTTTGCTCTGAGCTCTTACCTC 534 155 651 Antisense
TTCTTCAGCTTTTCATTCTTGCTCT 142 691 678 Antisense
GATGCTGTGATCGACTGGTAAACCC 323 413 704 Antisense
AAACCCCGACGGAACAGAGCTGTAT 165 127 723 Antisense
GGATACAAGAAATGCTCGTCACCAA 623 509 797 Antisense
CTCAGATCATACTTTTTTGCACACC 468 229 863 Antisense
ACCGGATTATCACAGTTTGCGCAAG 401 89 895 Antisense
TACTCGGGGACCTGCGAGGTTTCAA 403 613 987 Antisense
AGGATGTGCAACACCTGTCAACCGT 275 55 1052 Antisense
Sequence Source Affymetrix Proprietary Database