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[186433_at]

Description F33H12.1 /REP_DB=WormBase Gene ID /WP=CE17038 /TR=O44844 /GB=AAB95002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 34.8
(-3)
A 		70.3
(2.7)
A 		41.4
(-1.9)
A 		72
(3)
A 		37
B 24.7
(-2.9)
A 		63.2
(1.3)
A 		78
(3)
A 		24.2
(-3)
A 		54
C 47.4
(-3)
A 		55.6
(-1.1)
A 		56.7
(-0.9)
A 		73.9
(3)
A 		27
avr 35.6
(-3) 		63
(3) 		58.7
(2.1) 		56.7
(1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 64.7
(2.2)
A 		21
(-2.5)
A 		16.2
(-3)
A 		72.5
(3)
A 		33.2
(-1.2)
A 		68.3
(2.6)
A 		56
B 62.1
(1.3)
A 		40.7
(-0.7)
A 		35
(-1.2)
A 		79.8
(3)
M 		34.1
(-1.3)
M 		16.2
(-3)
A 		64
C 53.6
(1.4)
A 		38.2
(-0.8)
A 		23.2
(-3)
A 		48.1
(0.6)
A 		36.1
(-1.1)
A 		65
(3)
A 		42
avr 60.1
(2) 		33.3
(-1.8) 		24.8
(-3) 		66.8
(3) 		34.5
(-1.6) 		49.8
(0.6) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(-0.3)
A 		15.3
(3)
A 		10.8
(-2.6)
A 		10.5
(-3)
A 		5
B 7.9
(-1.7)
A 		15.6
(1.8)
A 		18.1
(3)
A 		5.2
(-3)
A 		13
C 15.7
(-0.4)
A 		16
(-0.1)
A 		19.8
(3)
A 		12.5
(-3)
A 		7
avr 12.1
(-0.6) 		15.6
(2.5) 		16.2
(3) 		9.4
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.9
(0.4)
A 		7.5
(-1.4)
A 		3.5
(-3)
A 		18.4
(3)
A 		10
(-0.4)
A 		16.6
(2.3)
A 		15
B 21.6
(3)
A 		13.5
(-0.1)
A 		8.5
(-2)
A 		21.1
(2.8)
M 		13.9
(0)
M 		6
(-3)
A 		16
C 19.9
(2.3)
A 		11.7
(-0.8)
A 		5.9
(-3)
A 		9.7
(-1.6)
A 		11.7
(-0.8)
A 		21.8
(3)
A 		16
avr 17.8
(3) 		10.9
(-0.5) 		6
(-3) 		16.4
(2.3) 		11.9
(0) 		14.8
(1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5201
Sequence Type Exemplar sequence
Representative Public ID F33H12.1 NCBI
Target Description F33H12.1 /REP_DB=WormBase Gene ID /WP=CE17038 /TR=O44844 /GB=AAB95002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061902 NCBI Caenorhabditis elegans F33H12.1 (F33H12.1) mRNA, complete cds. 11/11 None
SNAP00000001662 ENSEMBL cdna:SNAP chromosome:CEL140:II:2601116:2601780:1 9/11 None
GENEFINDER00000001664 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2600088:2601780:1 11/11 None
F33H12.1 ENSEMBL cdna:known chromosome:CEL140:II:2600554:2601780:1 gene:F33H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2600552-2601779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H12.1
Entrez Gene 185239 Entrez gene
SwissProt O44844 EMBL-EBI
WormBase CE17038 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95002 Hypothetical protein F33H12.1 [Caenorhabditis elegans] ref|NP_494303.1| F33H12.1 [Caenorhabditis elegans] 1.0E-176
blast AAB95002 Hypothetical protein F33H12.1 [Caenorhabditis elegans] ref|NP_494303.1| F33H12.1 [Caenorhabditis elegans] 1.0E-145
blast AAB95002 Hypothetical protein F33H12.1 [Caenorhabditis elegans] ref|NP_494303.1| F33H12.1 [Caenorhabditis elegans] 1.0E-111
blast AAB66047 Hypothetical protein F40E12.2 [Caenorhabditis elegans] ref|NP_494595.2| F40E12.2 [Caenorhabditis elegans] 2.0E-15
blast G88104 protein F40E12.2 [imported] - Caenorhabditis elegans 2.0E-15
blast AAB66047 Hypothetical protein F40E12.2 [Caenorhabditis elegans] ref|NP_494595.2| F40E12.2 [Caenorhabditis elegans] 9.0E-15
blast G88104 protein F40E12.2 [imported] - Caenorhabditis elegans 9.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 6.7
Pfam IPR001357 EMBL-EBI BRCT 2.4E-9
Pfam IPR001357 EMBL-EBI BRCT 6.7
Pfam IPR001357 EMBL-EBI BRCT 2.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.2E-7
Pfam IPR001357 EMBL-EBI BRCT 6.7
Pfam IPR001357 EMBL-EBI BRCT 2.4E-9
Sequence
Target Sequence 
>C. ELEGANS:186433_AT
aactgctggtatttgaagccctcgccaagcctggcatgatcgtgtccctcgattggcttg
acgcgtgtctggatgacccggctgcggttgatctggactggaagtttgcattgacggatg
tttgcttcgagaacaacacgtacgccaatgcgattacgagaatgaaacgggatcttcata
gaaagagacccccactcttctacggtttcaactttacgatccttcccaccaccaaccgtc
ggatgcaagctacccgtgaattttggaaccggattatcgaaggctttggcgggacatgtt
caatgtctccgattcctggagaagctggaaagatcccttatcatcttgtgaagagaaact
tgaaggttccttcggcctccatcgacagttccgtcgttctctacttcaatgatagtgtgc
ttcacgaaaaatggacatttgctaataactgcatctcattcctcggaatggggtggcttg
tggagtgcatcgtccgctatcgactcatcccatcggatcatccgtcgttgaagtatgagg
ctgatccacagtacctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCTGGTATTTGAAGCCCTCGC 690 141 290 Antisense
CGCCAAGCCTGGCATGATCGTGTCC 325 255 312 Antisense
TGGCTTGACGCGTGTCTGGATGACC 283 545 343 Antisense
GCTGCGGTTGATCTGGACTGGAAGT 107 297 370 Antisense
GAGAACAACACGTACGCCAATGCGA 86 393 418 Antisense
ATAGAAAGAGACCCCCACTCTTCTA 388 21 467 Antisense
CAACCGTCGGATGCAAGCTACCCGT 18 187 522 Antisense
GAAGGCTTTGGCGGGACATGTTCAA 121 333 568 Antisense
TGCTAATAACTGCATCTCATTCCTC 600 579 729 Antisense
ATCCCATCGGATCATCCGTCGTTGA 339 37 796 Antisense
ATGAGGCTGATCCACAGTACCTGCC 200 45 824 Antisense
Sequence Source Affymetrix Proprietary Database