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[186432_at]

Description C14C11.7 /REP_DB=WormBase Gene ID /WP=CE06826 /TR=Q17981 /GB=AAA96109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_high_8_8 > 37      6grp_highest_nonorm > 63      6grp_total > 91      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 284.4
(-3)
P 		403
(3)
P 		317.4
(-1.3)
P 		288.2
(-2.8)
A 		119
B 242.6
(-3)
P 		410.8
(3)
P 		364.3
(1.3)
P 		297.2
(-1.1)
P 		168
C 247.6
(-2.2)
P 		493.5
(3)
P 		420.7
(1.5)
P 		211.6
(-3)
A 		282
avr 258.2
(-3) 		435.8
(3) 		367.5
(0.7) 		265.7
(-2.7) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 472.1
(-1.2)
P 		444.7
(-1.7)
P 		551.3
(0.2)
P 		549.7
(0.2)
P 		701.9
(3)
P 		375.1
(-3)
P 		327
B 513.6
(-1.5)
P 		542.7
(-0.9)
P 		548.8
(-0.8)
P 		728.7
(3)
P 		652.3
(1.4)
P 		442.2
(-3)
P 		287
C 338.1
(-2.4)
P 		530.1
(-0.5)
P 		273.3
(-3)
P 		884.3
(3)
P 		617.7
(0.4)
P 		429.1
(-1.5)
P 		611
avr 441.3
(-2.5) 		505.8
(-1.2) 		457.8
(-2.2) 		720.9
(3) 		657.3
(1.8) 		415.5
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 103.5
(3)
P 		87.5
(1.4)
P 		83
(1)
P 		42.2
(-3)
A 		61
B 77.4
(-0.8)
P 		101.5
(3)
P 		84.4
(0.3)
P 		63.3
(-3)
P 		38
C 82
(-0.5)
P 		141.9
(2.7)
P 		146.6
(3)
P 		35.7
(-3)
A 		111
avr 87.6
(0.8) 		110.3
(3) 		104.7
(2.5) 		47.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 87
(-3)
P 		158.2
(0.4)
P 		120.1
(-1.4)
P 		139.4
(-0.5)
P 		211.8
(3)
P 		91.3
(-2.8)
P 		125
B 178.7
(-0.9)
P 		180.6
(-0.8)
P 		133.3
(-3)
P 		193
(-0.3)
P 		265
(3)
P 		164.9
(-1.6)
P 		132
C 125.3
(-0.4)
P 		161.7
(1.2)
P 		69.6
(-3)
P 		177.8
(2)
P 		199.9
(3)
P 		143.6
(0.4)
P 		130
avr 130.3
(-1.8) 		166.8
(0) 		107.7
(-3) 		170.1
(0.2) 		225.6
(3) 		133.3
(-1.7) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12408
Sequence Type Exemplar sequence
Representative Public ID C14C11.7 NCBI
Target Description C14C11.7 /REP_DB=WormBase Gene ID /WP=CE06826 /TR=Q17981 /GB=AAA96109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072092 NCBI Caenorhabditis elegans C14C11.7 (C14C11.7) mRNA, complete cds. 11/11 None
SNAP00000024125 ENSEMBL cdna:SNAP chromosome:CEL140:V:5668020:5668660:-1 11/11 None
GENEFINDER00000024134 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5668020:5668660:-1 11/11 None
C14C11.7 ENSEMBL cdna:known chromosome:CEL140:V:5668020:5668660:-1 gene:C14C11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5668019-5668660(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C11.7
Entrez Gene 182612 Entrez gene
SwissProt Q17981 EMBL-EBI
WormBase CE06826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96109 Hypothetical protein C14C11.7 [Caenorhabditis elegans] ref|NP_504493.1| C14C11.7 [Caenorhabditis elegans] 1.0E-25
blast CAE64592 Hypothetical protein CBG09347 [Caenorhabditis briggsae] 8.0E-24
Sequence
Target Sequence 
>C. ELEGANS:186432_AT
ggactgccagattggatcacgtcgttgtgccacgtgggatgaaatcgaggatgctccaca
aaccaagaggctccgagaggataaagttcaagaaaacgtcccccaacaaagtgtccagcc
agcaccaccaccaccagctgctcaacaagctccagctcctgccgagcaaccaaaattcta
catctcagctccaattcaaggatttaccgttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGCCAGATTGGATCACGTCGT 133 525 15 Antisense
GATTGGATCACGTCGTTGTGCCACG 512 435 24 Antisense
TCACGTCGTTGTGCCACGTGGGATG 447 625 31 Antisense
GGGATGAAATCGAGGATGCTCCACA 701 495 50 Antisense
GATGCTCCACAAACCAAGAGGCTCC 411 413 64 Antisense
AAACCAAGAGGCTCCGAGAGGATAA 520 123 74 Antisense
CAGCTCCTGCCGAGCAACCAAAATT 586 201 167 Antisense
TCCTGCCGAGCAACCAAAATTCTAC 657 593 171 Antisense
ACCAAAATTCTACATCTCAGCTCCA 377 83 183 Antisense
TCTACATCTCAGCTCCAATTCAAGG 705 613 191 Antisense
TCCAATTCAAGGATTTACCGTTAAT 93 1 204 Antisense
Sequence Source Affymetrix Proprietary Database