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[186431_at]

Description C46E10.2 /REP_DB=WormBase Gene ID /WP=CE08760 /TR=O44717 /GB=AAB96687.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 3.3
(-1.5)
A 		10.7
(3)
A 		0.8
(-3)
A 		7.4
(1)
A 		10
B 2.4
(-3)
A 		5.6
(-2.5)
A 		2.2
(-3)
A 		47.2
(3)
A 		45
C 0.8
(-3)
A 		12.3
(-0.2)
A 		1.3
(-2.9)
A 		25.8
(3)
A 		25
avr 2.2
(-2.8) 		9.5
(-1.1) 		1.4
(-3) 		26.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.4
(-2.8)
A 		1.9
(-3)
A 		25.2
(3)
A 		1.8
(-3)
A 		3.7
(-2.5)
A 		6.4
(-1.8)
A 		23
B 5.1
(-1)
A 		2.6
(-2.1)
A 		14.5
(3)
A 		3.3
(-1.8)
A 		0.5
(-3)
A 		2.7
(-2.1)
A 		14
C 13.2
(0.6)
A 		21
(3)
A 		2
(-2.8)
A 		1.5
(-3)
A 		2.9
(-2.6)
A 		3.6
(-2.4)
A 		20
avr 6.9
(-0.6) 		8.5
(0.2) 		13.9
(3) 		2.2
(-3) 		2.4
(-2.9) 		4.2
(-2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-0.1)
A 		2.3
(3)
A 		0.2
(-3)
A 		1.1
(-0.4)
A 		2
B 0.8
(-2.8)
A 		1.4
(-2.4)
A 		0.5
(-3)
A 		10.1
(3)
A 		10
C 0.3
(-3)
A 		3.5
(1.7)
A 		0.5
(-2.7)
A 		4.4
(3)
A 		4
avr 0.8
(-2.5) 		2.4
(-0.5) 		0.4
(-3) 		5.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.7
(-2.6)
A 		5.5
(3)
A 		0.5
(-2.9)
A 		1.1
(-2.2)
A 		1.6
(-1.6)
A 		5
B 1.8
(-0.1)
A 		0.9
(-1.7)
A 		3.5
(3)
A 		0.9
(-1.7)
A 		0.2
(-3)
A 		1
(-1.5)
A 		3
C 4.9
(1.5)
A 		6.4
(3)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.9
(-2.4)
A 		1.2
(-2.1)
A 		6
avr 2.4
(1.2) 		2.7
(1.8) 		3.2
(3) 		0.6
(-3) 		0.7
(-2.8) 		1.3
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5251
Sequence Type Exemplar sequence
Representative Public ID C46E10.2 NCBI
Target Description C46E10.2 /REP_DB=WormBase Gene ID /WP=CE08760 /TR=O44717 /GB=AAB96687.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062229 NCBI Caenorhabditis elegans C46E10.2 (C46E10.2) mRNA, complete cds. 11/11 None
C46E10.2 ENSEMBL cdna:known chromosome:CEL140:II:3723372:3723890:1 gene:C46E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3723370-3723889(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E10.2
Entrez Gene 183506 Entrez gene
SwissProt O44717 EMBL-EBI
WormBase CE08760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96687 Hypothetical protein C46E10.2 [Caenorhabditis elegans] ref|NP_494630.1| C46E10.2 [Caenorhabditis elegans] 4.0E-54
blast AAK68294 Serpentine receptor, class d (delta) protein 56 [Caenorhabditis elegans] ref|NP_495497.1| Serpentine Receptor, class D (delta) family member (srd-56) [Caenorhabditis elegans] 1.0E-33
blast CAE67565 Hypothetical protein CBG13092 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494630.1 3 13-35,64-86,99-118
C46E10.2 3 13-35,64-86,99-118
Sequence
Target Sequence 
>C. ELEGANS:186431_AT
tgtgctccgactcgaattgctacgtaccctttttcaatatttattggagtttctacgcaa
ttttcggattcacatttcagctaactttgatatttttaatttttcaaaaactaccagtat
ttctcagcaattttaaatattttttggttaacaacgcgttttctcaattggcacttgtcg
tatttgcatttacacactcagcagttgtacaaggttctgggatggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTCCGACTCGAATTGCTACGT 616 555 14 Antisense
GAATTGCTACGTACCCTTTTTCAAT 237 323 27 Antisense
GAGTTTCTACGCAATTTTCGGATTC 173 399 60 Antisense
GCAATTTTCGGATTCACATTTCAGC 475 323 70 Antisense
TTCACATTTCAGCTAACTTTGATAT 353 687 82 Antisense
AAACTACCAGTATTTCTCAGCAATT 71 129 121 Antisense
TTGGTTAACAACGCGTTTTCTCAAT 227 707 157 Antisense
GCGTTTTCTCAATTGGCACTTGTCG 441 291 169 Antisense
GGCACTTGTCGTATTTGCATTTACA 496 535 183 Antisense
GCATTTACACACTCAGCAGTTGTAC 163 309 199 Antisense
AGTTGTACAAGGTTCTGGGATGGCA 634 63 216 Antisense
Sequence Source Affymetrix Proprietary Database