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[186430_at]

Description B0207.11 /REP_DB=WormBase Gene ID /WP=CE07689 /TR=O01434 /GB=AAB52464.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 9.6
(-2.7)
A 		6.8
(-3)
A 		17
(-2)
A 		66.2
(3)
A 		59
B 2.9
(-2.9)
A 		2.4
(-3)
A 		9.1
(-1.5)
A 		29
(3)
A 		27
C 7.5
(-3)
A 		11.2
(-2.6)
A 		7
(-3)
A 		73.3
(3)
P 		66
avr 6.7
(-3) 		6.8
(-3) 		11
(-2.5) 		56.2
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 11.6
(-2.6)
A 		6.5
(-3)
A 		16.8
(-2.2)
A 		10.1
(-2.7)
A 		84.3
(3)
P 		82.7
(2.9)
P 		78
B 15.6
(-2.2)
A 		3.1
(-3)
A 		6.4
(-2.8)
A 		25.6
(-1.5)
A 		67
(1.2)
P 		93.4
(3)
P 		90
C 2.1
(-3)
A 		3.2
(-2.9)
A 		3.1
(-2.9)
A 		41.8
(-0.8)
A 		35.6
(-1.2)
A 		111.4
(3)
P 		109
avr 9.8
(-2.6) 		4.3
(-3) 		8.8
(-2.7) 		25.8
(-1.6) 		62.3
(0.8) 		95.8
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.5
(-1.5)
A 		1.5
(-3)
A 		4.5
(-0.8)
A 		9.7
(3)
A 		8
B 0.9
(-2.7)
A 		0.6
(-3)
A 		2.1
(-1.4)
A 		6.2
(3)
A 		6
C 2.5
(-3)
A 		3.2
(-2.6)
A 		2.5
(-3)
A 		12.4
(3)
P 		10
avr 2.3
(-2.6) 		1.8
(-3) 		3
(-2.1) 		9.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.1
(-3)
A 		2.3
(-2.9)
A 		3.7
(-2.6)
A 		2.6
(-2.9)
A 		25.4
(3)
P 		20.1
(1.6)
P 		23
B 5.4
(-2.2)
A 		1
(-3)
A 		1.6
(-2.9)
A 		6.8
(-2)
A 		27.2
(1.7)
P 		34.8
(3)
P 		34
C 0.8
(-3)
A 		1
(-3)
A 		0.8
(-3)
A 		8.4
(-1.8)
A 		11.5
(-1.2)
A 		37.3
(3)
P 		37
avr 2.8
(-2.7) 		1.4
(-3) 		2
(-2.9) 		5.9
(-2.1) 		21.4
(1.1) 		30.7
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1715
Sequence Type Exemplar sequence
Representative Public ID B0207.11 NCBI
Target Description B0207.11 /REP_DB=WormBase Gene ID /WP=CE07689 /TR=O01434 /GB=AAB52464.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059320 NCBI Caenorhabditis elegans B0207.11 (B0207.11) mRNA, complete cds. 11/11 None
GENEFINDER00000009184 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5969878:5972261:-1 10/11 None
SNAP00000009178 ENSEMBL cdna:SNAP chromosome:CEL140:I:5971168:5972261:-1 10/11 None
B0207.11 ENSEMBL cdna:known chromosome:CEL140:I:5971168:5972261:-1 gene:B0207.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5971167-5972261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.11
Entrez Gene 181840 Entrez gene
SwissProt O01434 EMBL-EBI
WormBase CE07689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52464 Hypothetical protein B0207.11 [Caenorhabditis elegans] ref|NP_491721.1| B0207.11 [Caenorhabditis elegans] 1.0E-147
blast AAB52464 Hypothetical protein B0207.11 [Caenorhabditis elegans] ref|NP_491721.1| B0207.11 [Caenorhabditis elegans] 1.0E-129
blast AAB52464 Hypothetical protein B0207.11 [Caenorhabditis elegans] ref|NP_491721.1| B0207.11 [Caenorhabditis elegans] 1.0E-127
blast CAB02305 Hypothetical protein T08G11.2 [Caenorhabditis elegans] ref|NP_492402.1| EGg Laying defective family member (egl-32) [Caenorhabditis elegans] 1.0E-104
blast CAB02305 Hypothetical protein T08G11.2 [Caenorhabditis elegans] ref|NP_492402.1| EGg Laying defective family member (egl-32) [Caenorhabditis elegans] 1.0E-101
blast CAB02305 Hypothetical protein T08G11.2 [Caenorhabditis elegans] ref|NP_492402.1| EGg Laying defective family member (egl-32) [Caenorhabditis elegans] 1.0E-99
blast CAE60431 Hypothetical protein CBG04039 [Caenorhabditis briggsae] 9.0E-74
blast CAE60431 Hypothetical protein CBG04039 [Caenorhabditis briggsae] 3.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009184 1 294-316
Sequence
Target Sequence 
>C. ELEGANS:186430_AT
gtgaaccagtggaaccacctgcaacactgtcaactgaaacatctaaaaccaacgcaatcg
aggaatcaacagtcaaacgaagtgaagcattgtcagcctacattggagttgctacactca
atgacgctgaaaatcatttgactcgtcgtggagagtttgcactttatcacttattcaatc
caaatggacgccttgatacaatcactgagaagcttccattgatgattgtctaccgtacca
caacaaaaaagaatcgtcactactcgatccgtactacttgtgatcaacaattctttgtcg
attgtggatatcctaatgttcgaaaacattattcgctaaatcatctggtcaagttctaca
aagtaagaatactccttccagacaccattcagaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACCAGTGGAACCACCTGCAAC 388 481 329 Antisense
CCACCTGCAACACTGTCAACTGAAA 342 273 343 Antisense
GAAACATCTAAAACCAACGCAATCG 153 357 364 Antisense
GCATTGTCAGCCTACATTGGAGTTG 581 307 415 Antisense
GTTGCTACACTCAATGACGCTGAAA 445 439 436 Antisense
GAAAATCATTTGACTCGTCGTGGAG 646 351 457 Antisense
GAGTTTGCACTTTATCACTTATTCA 378 399 481 Antisense
AAATGGACGCCTTGATACAATCACT 369 121 510 Antisense
GCTTCCATTGATGATTGTCTACCGT 118 307 540 Antisense
GCTAAATCATCTGGTCAAGTTCTAC 459 301 663 Antisense
CTCCTTCCAGACACCATTCAGAAAC 480 235 700 Antisense
Sequence Source Affymetrix Proprietary Database