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[186429_at]

Description C33C12.1 /REP_DB=WormBase Gene ID /WP=CE08549 /TR=O16584 /GB=AAB66055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.4
(-3)
A 		4.7
(-1.9)
A 		1.9
(-2.8)
A 		19.3
(3)
A 		18
B 1.1
(-3)
A 		6.6
(3)
A 		1.5
(-2.6)
A 		3
(-0.9)
A 		6
C 3.1
(-2)
A 		1.2
(-3)
A 		8.6
(1.1)
A 		12.1
(3)
A 		11
avr 1.9
(-3) 		4.2
(-1.6) 		4
(-1.7) 		11.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 33.9
(3)
A 		2.4
(-2.7)
A 		4.2
(-2.4)
A 		3.6
(-2.5)
A 		6.3
(-2)
A 		0.7
(-3)
A 		33
B 1.4
(-3)
A 		1.8
(-2.8)
A 		16.8
(3)
A 		13.9
(1.9)
A 		13
(1.5)
A 		1.6
(-2.9)
A 		15
C 2.2
(-2.7)
A 		1.9
(-3)
A 		7.9
(3)
A 		2.5
(-2.4)
A 		3.4
(-1.5)
A 		3.2
(-1.7)
A 		6
avr 12.5
(3) 		2
(-2.9) 		9.6
(1.4) 		6.7
(-0.3) 		7.6
(0.3) 		1.8
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.5
(-3)
A 		1
(-1.7)
A 		0.5
(-3)
A 		2.8
(3)
A 		2
B 0.4
(-2.5)
A 		1.6
(3)
A 		0.3
(-3)
A 		0.6
(-1.6)
A 		1
C 1
(-1.6)
A 		0.4
(-3)
A 		3
(3)
A 		2
(0.7)
A 		3
avr 0.6
(-3) 		1
(-1) 		1.3
(0.5) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.2
(3)
A 		0.9
(-2.3)
A 		0.9
(-2.3)
A 		0.9
(-2.3)
A 		1.9
(-1.3)
A 		0.2
(-3)
A 		6
B 0.5
(-3)
A 		0.6
(-2.9)
A 		4.1
(1.5)
A 		3.7
(1)
A 		5.3
(3)
A 		0.6
(-2.9)
A 		5
C 0.8
(-1.8)
A 		0.6
(-2.6)
A 		2
(3)
A 		0.5
(-3)
A 		1.1
(-0.6)
A 		1.1
(-0.6)
A 		2
avr 2.5
(2.2) 		0.7
(-2.7) 		2.3
(1.6) 		1.7
(0) 		2.8
(3) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4861
Sequence Type Exemplar sequence
Representative Public ID C33C12.1 NCBI
Target Description C33C12.1 /REP_DB=WormBase Gene ID /WP=CE08549 /TR=O16584 /GB=AAB66055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061810 NCBI Caenorhabditis elegans C33C12.1 (C33C12.1) mRNA, complete cds. 11/11 None
C33C12.1 ENSEMBL cdna:known chromosome:CEL140:II:2197847:2198676:1 gene:C33C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2197845-2198675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33C12.1
Entrez Gene 183150 Entrez gene
SwissProt O16584 EMBL-EBI
WormBase CE08549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494211 C33C12.1 [Caenorhabditis elegans] gb|AAB66055.1| Hypothetical protein C33C12.1 [Caenorhabditis elegans] 5.0E-72
Sequence
Target Sequence 
>C. ELEGANS:186429_AT
cgcgcaacaacttttccggcgagaaaggagaatttgtgcgggggggggggggggtgaaat
atgaaaacaaggaaaaatctacagacgtcacacttgaagttcgaaatttcgttcaaatta
gaaacatcgtggaaggaaatccaatttttcggcggaaaattccaaaacaatcagggaagc
tgaaattcggagggaattcttctctgaagcttcaaacagagcaacttggccaggaaaaca
gaccaaaatctccttctgtctctctgaaacctaaaagaccagaagattttttgactttag
cttcagatgactacaaatcagaaattctgccggttttaaccggattcaagccaattttgc
tggaaactttgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGCAACAACTTTTCCGGCGAGAA 138 255 20 Antisense
AAATCTACAGACGTCACACTTGAAG 5 119 94 Antisense
GGAGGGAATTCTTCTCTGAAGCTTC 703 515 208 Antisense
GCTTCAAACAGAGCAACTTGGCCAG 17 295 228 Antisense
AGCAACTTGGCCAGGAAAACAGACC 10 77 239 Antisense
AGACCAAAATCTCCTTCTGTCTCTC 182 71 259 Antisense
TCCTTCTGTCTCTCTGAAACCTAAA 642 589 270 Antisense
GACCAGAAGATTTTTTGACTTTAGC 113 383 296 Antisense
TGACTTTAGCTTCAGATGACTACAA 253 571 311 Antisense
TTAACCGGATTCAAGCCAATTTTGC 237 681 355 Antisense
GCCAATTTTGCTGGAAACTTTGAGG 181 275 369 Antisense
Sequence Source Affymetrix Proprietary Database