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[186428_at]

Description W05G11.2 /REP_DB=WormBase Gene ID /WP=CE14626 /TR=O61211 /GB=AAC71146.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 8.7
(-2.4)
A 		7.7
(-2.6)
A 		4.9
(-3)
A 		43.7
(3)
A 		39
B 11.9
(1)
A 		3.7
(-3)
A 		16
(3)
A 		4.9
(-2.4)
A 		12
C 9.9
(-0.7)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		21
(3)
A 		18
avr 10.2
(-1.3) 		4.9
(-3) 		7.9
(-2) 		23.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.5
(-2.7)
A 		1.9
(-2.6)
A 		13.2
(2.5)
A 		0.9
(-3)
A 		14.4
(3)
A 		10.3
(1.2)
A 		14
B 0.5
(-3)
A 		1.7
(-2.5)
A 		15.4
(3)
A 		6
(-0.8)
A 		2.4
(-2.2)
A 		7.8
(-0.1)
A 		15
C 10
(-0.5)
A 		18.9
(2.2)
A 		1.6
(-3)
A 		21.6
(3)
A 		12.6
(0.3)
A 		17.1
(1.7)
A 		20
avr 4
(-3) 		7.5
(-0.3) 		10.1
(1.8) 		9.5
(1.3) 		9.8
(1.5) 		11.7
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.2
(-0.8)
A 		1.7
(-2.5)
A 		1.3
(-3)
A 		6.4
(3)
A 		5
B 3.8
(3)
A 		0.9
(-3)
A 		3.7
(2.8)
A 		1
(-2.8)
A 		3
C 3.3
(2.5)
A 		0.9
(-3)
A 		1
(-2.8)
A 		3.5
(3)
A 		3
avr 3.4
(2.5) 		1.2
(-3) 		2
(-1) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.3
(-2.9)
A 		0.7
(-2.3)
A 		2.9
(0.9)
A 		0.2
(-3)
A 		4.4
(3)
A 		2.5
(0.3)
A 		4
B 0.2
(-3)
A 		0.6
(-2.3)
A 		3.7
(3)
A 		1.6
(-0.6)
A 		1
(-1.6)
A 		2.9
(1.6)
A 		4
C 3.7
(0.7)
A 		5.8
(3)
A 		0.4
(-3)
A 		4.3
(1.3)
A 		4.1
(1.1)
A 		5.7
(2.9)
A 		5
avr 1.4
(-3) 		2.4
(-0.4) 		2.3
(-0.7) 		2
(-1.4) 		3.2
(1.7) 		3.7
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8140
Sequence Type Exemplar sequence
Representative Public ID W05G11.2 NCBI
Target Description W05G11.2 /REP_DB=WormBase Gene ID /WP=CE14626 /TR=O61211 /GB=AAC71146.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064731 NCBI Caenorhabditis elegans W05G11.2 (W05G11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017793 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:52452:58681:1 10/11 None
W05G11.2 ENSEMBL cdna:known chromosome:CEL140:III:57481:58681:1 gene:W05G11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029924 2/11 Cross Hyb Matching Probes None
SNAP00000029922 2/11 Cross Hyb Matching Probes None
SNAP00000017784 3/11 Cross Hyb Matching Probes None
SNAP00000017785 5/11 Cross Hyb Matching Probes None
SNAP00000029927 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012400 2/11 Cross Hyb Matching Probes None
SNAP00000038617 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038626 2/11 Cross Hyb Matching Probes None
SNAP00000010126 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010128 1/11 Cross Hyb Matching Probes None
F27D4.3 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:57480-58681(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05G11.2
Entrez Gene 189219 Entrez gene
SwissProt O61211 EMBL-EBI
WormBase CE14626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 1.0E-115
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 1.0E-104
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 9.0E-58
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 6.0E-56
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 1.0E-36
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 2.8E-6
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 2.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497132.1 1 200-219
W05G11.2 1 200-219
GENEFINDER00000017793 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186428_AT
gacgcgaacgattgggataacacggaaatggctggaggagagaagtaccggcggtggcga
cagcattgcttcgcgaagaacgaaagatggaagataagcgatgccgtgagagagtacaat
ttccaaaaggaagcatttcatctcgctgtgagcctcgtggatcttgctcttccaatgttc
atcattgataaaatgcgatttcaactggttggaattacgtctatgatgatcacaaaaata
cgaggaaatcttcccaccaatcgagtgcccgactttcttttgatggagcaattgattgga
aagttcgaatttgtcgtcgctaagcccacaccatcttggctcggagcatgctttgcaaag
agaattaaccttacaaaaaagatgcggaatgatgtcaaactcctcgagctgtcgccgata
gatgcttattttctacgttacagcccatctgatgctgctcagaatcacagaatcaacaat
tcgaccaagtggctgctaatgatggatccaaggaatcgggaatcgagacgatccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGAACGATTGGGATAACACGG 136 381 70 Antisense
CGGTGGCGACAGCATTGCTTCGCGA 565 243 121 Antisense
GACAGCATTGCTTCGCGAAGAACGA 264 369 128 Antisense
GATGGAAGATAAGCGATGCCGTGAG 260 407 155 Antisense
TCAACTGGTTGGAATTACGTCTATG 288 631 270 Antisense
GGAATTACGTCTATGATGATCACAA 540 533 280 Antisense
GCCCGACTTTCTTTTGATGGAGCAA 262 285 336 Antisense
GACTTTCTTTTGATGGAGCAATTGA 55 373 340 Antisense
CAACAATTCGACCAAGTGGCTGCTA 296 189 543 Antisense
CCAAGTGGCTGCTAATGATGGATCC 109 277 554 Antisense
AGGAATCGGGAATCGAGACGATCCG 356 55 580 Antisense
Sequence Source Affymetrix Proprietary Database