[Home] | [Total List]

[186427_at]

Description T05H4.11 /REP_DB=WormBase Gene ID /WP=CE27440 /TR=O16516 /GB=AAB66017.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 96      6grp_total > 86      4grp_total > 51      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 739.9
(0.2)
P 		804.4
(3)
P 		665.2
(-3)
P 		667.9
(-2.9)
P 		139
B 715.2
(-1.8)
P 		964.5
(3)
P 		831.7
(0.5)
P 		650.3
(-3)
P 		314
C 838.3
(0.4)
P 		1039.6
(3)
P 		836.9
(0.4)
P 		578
(-3)
P 		462
avr 764.5
(-0.4) 		936.2
(3) 		777.9
(-0.1) 		632.1
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 690.8
(-3)
P 		800.5
(-1.6)
P 		699.4
(-2.9)
P 		1023
(1.3)
P 		935.1
(0.1)
P 		1156.8
(3)
P 		466
B 761.1
(-2.4)
P 		712.3
(-3)
P 		718.9
(-2.9)
P 		954.5
(-0)
P 		894.4
(-0.7)
P 		1197.1
(3)
P 		485
C 673
(-3)
P 		741.9
(-2.3)
P 		703.8
(-2.7)
P 		1030.7
(0.6)
P 		850.6
(-1.2)
P 		1265.2
(3)
P 		592
avr 708.3
(-3) 		751.6
(-2.5) 		707.4
(-3) 		1002.7
(0.6) 		893.4
(-0.8) 		1206.4
(3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 269.4
(3)
P 		174.6
(-0.3)
P 		173.9
(-0.3)
P 		97.8
(-3)
P 		172
B 228.1
(2.4)
P 		238.2
(3)
P 		192.7
(0.3)
P 		138.6
(-3)
P 		100
C 277.5
(2.4)
P 		298.9
(3)
P 		291.7
(2.8)
P 		97.5
(-3)
P 		201
avr 258.3
(3) 		237.2
(2.1) 		219.4
(1.4) 		111.3
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 127.3
(-3)
P 		284.7
(3)
P 		152.3
(-2)
P 		259.4
(2)
P 		282.2
(2.9)
P 		281.7
(2.9)
P 		157
B 264.8
(-1)
P 		237.1
(-1.6)
P 		174.6
(-3)
P 		252.8
(-1.3)
P 		363.4
(1.2)
P 		446.4
(3)
P 		272
C 249.4
(-1.3)
P 		226.4
(-1.8)
P 		179.1
(-3)
P 		207.3
(-2.3)
P 		275.2
(-0.6)
P 		423.5
(3)
P 		244
avr 213.8
(-1.7) 		249.4
(-0.7) 		168.7
(-3) 		239.8
(-1) 		306.9
(0.9) 		383.9
(3) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12409
Sequence Type Exemplar sequence
Representative Public ID T05H4.11 NCBI
Target Description T05H4.11 /REP_DB=WormBase Gene ID /WP=CE27440 /TR=O16516 /GB=AAB66017.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072231 NCBI Caenorhabditis elegans T05H4.11 (T05H4.11) mRNA, complete cds. 11/11 None
SNAP00000040304 ENSEMBL cdna:SNAP chromosome:CEL140:V:6427302:6428129:-1 10/11 None
GENEFINDER00000040319 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6426971:6428437:-1 10/11 None
T05H4.11 ENSEMBL cdna:known chromosome:CEL140:V:6426846:6428546:-1 gene:T05H4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6427301-6428076(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H4.11
Entrez Gene 179024 Entrez gene
SwissProt O16516 EMBL-EBI
WormBase CE27440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504632 T05H4.11 [Caenorhabditis elegans] gb|AAB66017.2| Hypothetical protein T05H4.11 [Caenorhabditis elegans] 2.0E-97
blast NP_504632 T05H4.11 [Caenorhabditis elegans] gb|AAB66017.2| Hypothetical protein T05H4.11 [Caenorhabditis elegans] 7.0E-87
blast NP_504632 T05H4.11 [Caenorhabditis elegans] gb|AAB66017.2| Hypothetical protein T05H4.11 [Caenorhabditis elegans] 1.0E-61
blast CAE71875 Hypothetical protein CBG18930 [Caenorhabditis briggsae] 6.0E-35
blast CAE71875 Hypothetical protein CBG18930 [Caenorhabditis briggsae] 6.0E-33
blast CAE71875 Hypothetical protein CBG18930 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186427_AT
gaatggacgttcgtcgctgattgcttcaatctcgacaaagaaactcgaagtgaacgagaa
caggagcttctctcgctgtgcaacttcttcgattcgaatgagaaggaactcgagttgagc
gatgcttctgacgaatcggatgactcggttccattcgaattatttgccgagcagggaatg
cgaattgcttggactcaaatcgttacctcaccgtcattgagcaatcttcgcttagctagc
attctccgcttcgatacaaaaaagaaaatagtttcacccttcattgaagacgaaaagagt
cctcaagagttcttcttggacgacaacgaagcggtcgagaatgctttcaaaggtgtctta
ccatgcacaaattctcaaaaagtgagcaggtcacgtcgagcttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGACGTTCGTCGCTGATTGCT 230 333 115 Antisense
CGAGAACAGGAGCTTCTCTCGCTGT 710 249 169 Antisense
GAACTCGAGTTGAGCGATGCTTCTG 344 349 220 Antisense
GAATCGGATGACTCGGTTCCATTCG 225 329 247 Antisense
TGCTTGGACTCAAATCGTTACCTCA 400 575 300 Antisense
GTTACCTCACCGTCATTGAGCAATC 214 447 316 Antisense
AATCTTCGCTTAGCTAGCATTCTCC 80 171 337 Antisense
TAGCATTCTCCGCTTCGATACAAAA 307 651 351 Antisense
AAGAGTTCTTCTTGGACGACAACGA 564 149 419 Antisense
GTCTTACCATGCACAAATTCTCAAA 147 469 469 Antisense
TGAGCAGGTCACGTCGAGCTTCAAA 555 569 497 Antisense
Sequence Source Affymetrix Proprietary Database