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[186425_at]

Description Y62H9A.10 /REP_DB=WormBase Gene ID /WP=CE19246 /TR=Q9XWS9 /GB=CAA21566.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 36.5
(3)
A 		9.6
(-3)
A 		20.8
(-0.5)
A 		22.1
(-0.2)
A 		27
B 31.8
(0.7)
A 		48.2
(3)
A 		4.7
(-3)
A 		4.7
(-3)
A 		44
C 32.7
(3)
A 		10.9
(-1.3)
A 		2.2
(-3)
A 		11.5
(-1.2)
A 		31
avr 33.7
(3) 		22.9
(0.4) 		9.2
(-3) 		12.8
(-2.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.2
(-2.4)
A 		2.5
(-3)
A 		2.8
(-2.7)
A 		5
(-0.8)
A 		4.7
(-1.1)
A 		9.3
(3)
A 		7
B 3.6
(-0.9)
A 		4.9
(0.7)
A 		2.2
(-2.6)
A 		6.8
(3)
A 		3.6
(-0.9)
A 		1.9
(-3)
A 		5
C 2.6
(-3)
A 		22.5
(3)
A 		7.6
(-1.5)
A 		2.6
(-3)
A 		15.8
(1)
A 		5.1
(-2.2)
A 		20
avr 3.1
(-3) 		10
(3) 		4.2
(-2) 		4.8
(-1.5) 		8
(1.3) 		5.4
(-1) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.3
(3)
A 		2.1
(-3)
A 		5.4
(-1.2)
A 		3.2
(-2.4)
A 		11
B 10.1
(2)
A 		11.9
(3)
A 		1.1
(-2.9)
A 		1
(-3)
A 		11
C 10.8
(3)
A 		3.1
(-1.6)
A 		0.8
(-3)
A 		1.9
(-2.3)
A 		10
avr 11.4
(3) 		5.7
(-0.6) 		2.4
(-2.7) 		2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(-1.9)
A 		0.6
(-3)
A 		1.3
(-0.5)
A 		1.4
(-0.2)
A 		2.3
(3)
A 		2
B 1.3
(0.7)
A 		1.6
(2.1)
A 		0.5
(-3)
A 		1.8
(3)
A 		1.5
(1.6)
A 		0.7
(-2.1)
A 		1
C 1
(-2.5)
A 		6.9
(3)
A 		1.9
(-1.7)
A 		0.5
(-3)
A 		5.1
(1.3)
A 		1.7
(-1.9)
A 		6
avr 1
(-3) 		3.1
(3) 		1
(-3) 		1.2
(-2.4) 		2.7
(1.9) 		1.6
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16959
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.10 NCBI
Target Description Y62H9A.10 /REP_DB=WormBase Gene ID /WP=CE19246 /TR=Q9XWS9 /GB=CAA21566.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077590 NCBI Caenorhabditis elegans Y62H9A.10 (Y62H9A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000025470 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11899768:11902670:-1 11/11 None
Y62H9A.10 ENSEMBL cdna:known chromosome:CEL140:X:11899768:11902670:-1 gene:Y62H9A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025462 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11899767-11902670(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.10
Entrez Gene 190465 Entrez gene
SwissProt Q9XWS9 EMBL-EBI
WormBase CE19246 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21566 Hypothetical protein Y62H9A.10 [Caenorhabditis elegans] ref|NP_509991.1| Y62H9A.10 [Caenorhabditis elegans] 0.0
blast CAE69406 Hypothetical protein CBG15559 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509991.1 7 20-42,55-77,97-119,139-161,187-206,234-253,263-282
Y62H9A.10 7 20-42,55-77,97-119,139-161,187-206,234-253,263-282
GENEFINDER00000025470 7 20-42,55-77,97-119,139-161,187-206,234-253,263-282
Sequence
Target Sequence 
>C. ELEGANS:186425_AT
acggaaattcgaactctgtactcaataaaggaatgcgacatttgacaaagacagtttcat
tcattactttggcttccgtgtttttagtgttgatccctgaagtctggtggtactttacct
tgtttggaggaatggacgccagtatctatttcatgttcattcttctcaaaaaaatcgtga
cgttcttcatacacacaattcgtcaccgtgaactcatgaaacatgtacataaagtgttgc
ccagaaagttgacaaaactcatcaactttgatgcacagtcacattcagcagtttcaaaag
tgaaagttataagggaatcgtctcatccagtgactaccacaaatttaatggctttcaaac
aaggattatatactacaatctttccaccaactgaatatgctgtagcaaataccggtttca
cta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGAAATTCGAACTCTGTACTCAA 696 95 659 Antisense
TTCATTCATTACTTTGGCTTCCGTG 582 687 714 Antisense
GGCTTCCGTGTTTTTAGTGTTGATC 587 537 729 Antisense
GTTGATCCCTGAAGTCTGGTGGTAC 517 437 747 Antisense
GGACGCCAGTATCTATTTCATGTTC 36 525 792 Antisense
TGACGTTCTTCATACACACAATTCG 648 569 836 Antisense
TTCGTCACCGTGAACTCATGAAACA 83 695 857 Antisense
GCACAGTCACATTCAGCAGTTTCAA 226 317 931 Antisense
TCGTCTCATCCAGTGACTACCACAA 125 603 976 Antisense
ATATACTACAATCTTTCCACCAACT 624 19 1026 Antisense
GCTGTAGCAAATACCGGTTTCACTA 423 295 1057 Antisense
Sequence Source Affymetrix Proprietary Database