[Home] | [Total List]

[186424_at]

Description Y64G10A.1 /REP_DB=WormBase Gene ID /WP=CE24547 /TR=Q9U1V8 /GB=CAB57909.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 12.1
(-3)
A 		51.7
(3)
A 		16.5
(-2.3)
A 		19.7
(-1.8)
A 		40
B 50.7
(2.3)
A 		56.4
(3)
A 		7.3
(-3)
A 		12.7
(-2.3)
A 		49
C 42.8
(-3)
A 		59.4
(3)
A 		55.2
(1.5)
A 		52.2
(0.4)
A 		17
avr 35.2
(-1.2) 		55.8
(3) 		26.3
(-3) 		28.2
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13
(0.5)
A 		6.2
(-3)
A 		12.1
(0)
A 		12.2
(0.1)
A 		17.9
(3)
A 		14.3
(1.2)
A 		12
B 35.7
(3)
A 		9.5
(-2.7)
A 		8.2
(-3)
A 		13.7
(-1.8)
A 		13.4
(-1.9)
A 		8.2
(-3)
A 		28
C 43
(3)
A 		40.9
(2.7)
A 		10.1
(-2.1)
A 		11
(-2)
A 		7.3
(-2.6)
A 		4.6
(-3)
A 		38
avr 30.6
(3) 		18.9
(-0.3) 		10.1
(-2.7) 		12.3
(-2.1) 		12.9
(-1.9) 		9
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.4
(-1.9)
A 		11.2
(3)
A 		4.3
(-2)
A 		2.9
(-3)
A 		8
B 16.2
(3)
A 		13.9
(2)
A 		1.7
(-3)
A 		2.7
(-2.6)
A 		15
C 14.2
(0.1)
A 		17.1
(1.8)
A 		19.2
(3)
A 		8.8
(-3)
A 		10
avr 11.6
(1.4) 		14.1
(3) 		8.4
(-0.7) 		4.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.4
(-2.6)
A 		2.2
(-3)
A 		2.6
(-2.3)
A 		3.1
(-1.3)
A 		5.4
(3)
A 		3.5
(-0.6)
A 		3
B 12.4
(3)
A 		3.2
(-2.3)
A 		2
(-3)
A 		3.6
(-2.1)
A 		5.4
(-1)
A 		3.1
(-2.4)
A 		10
C 15.9
(3)
A 		12.5
(1.6)
A 		2.6
(-2.5)
A 		2.2
(-2.7)
A 		2.4
(-2.6)
A 		1.5
(-3)
A 		14
avr 10.2
(3) 		6
(-0.2) 		2.4
(-3) 		3
(-2.5) 		4.4
(-1.5) 		2.7
(-2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9722
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.1 NCBI
Target Description Y64G10A.1 /REP_DB=WormBase Gene ID /WP=CE24547 /TR=Q9U1V8 /GB=CAB57909.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070331 NCBI Caenorhabditis elegans Y64G10A.1 (Y64G10A.1) mRNA, complete cds. 11/11 None
SNAP00000010750 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14236870:14239045:-1 11/11 None
Y64G10A.1 ENSEMBL cdna:known chromosome:CEL140:IV:14236870:14239045:-1 gene:Y64G10A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010763 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14236875-14239051(-) 94.64 100.0
Public Domain and Genome References
Gene Title
Ensembl Y64G10A.1
Entrez Gene 190473 Entrez gene
SwissProt Q9U1V8 EMBL-EBI
WormBase CE24547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57909 Hypothetical protein Y64G10A.1 [Caenorhabditis elegans] ref|NP_502732.1| Y64G10A.1 [Caenorhabditis elegans] 1.0E-173
blast CAB57909 Hypothetical protein Y64G10A.1 [Caenorhabditis elegans] ref|NP_502732.1| Y64G10A.1 [Caenorhabditis elegans] 1.0E-167
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 1.0E-101
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-100
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 3.0E-96
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 3.0E-94
Sequence
Target Sequence 
>C. ELEGANS:186424_AT
atagcctgcaattatcccagaggatctgaagctccttgttgtaatggttctccagttgaa
attaataactttttccattgcaccaatgccacaaaaagtgcaccagcaaaacggtgctgt
ccgactggcggagtttggacggagtggagcagctggggaaagagtagggataaaattgaa
tggaaccgaaccagaaaatgcctttccggaggatataactgtgcatgtgttggagaaagt
gagcaaaccaagtttgagtgtccatgtactccaatgacagcattccccaccggcaataca
gcatgttcaggattgactaaaaaagttccgtatacaatccaaaaaccatttatggagccc
acaacctgcacgacaagattctcaatggaaaattcaaacttccgccaatcgttctattac
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCCTGCAATTATCCCAGAGGAT 411 23 241 Antisense
AGCTCCTTGTTGTAATGGTTCTCCA 618 79 270 Antisense
TAATAACTTTTTCCATTGCACCAAT 548 635 303 Antisense
GCTGTCCGACTGGCGGAGTTTGGAC 116 293 356 Antisense
TTGGACGGAGTGGAGCAGCTGGGGA 103 709 375 Antisense
GTCCATGTACTCCAATGACAGCATT 542 477 500 Antisense
CCCACCGGCAATACAGCATGTTCAG 310 259 526 Antisense
ACCATTTATGGAGCCCACAACCTGC 170 87 585 Antisense
CACAACCTGCACGACAAGATTCTCA 113 195 600 Antisense
GAAAATTCAAACTTCCGCCAATCGT 423 353 628 Antisense
CTTCCGCCAATCGTTCTATTACAAA 42 221 639 Antisense
Sequence Source Affymetrix Proprietary Database