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[186423_at]

Description F56D12.4 /REP_DB=WormBase Gene ID /WP=CE11252 /TR=O16645 /GB=AAB66118.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 31      6grp_cgc > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 89.6
(3)
P 		19.8
(-2.2)
A 		9
(-3)
A 		31.2
(-1.3)
A 		81
B 101.3
(3)
P 		19.4
(-2.3)
A 		7.8
(-3)
A 		73.9
(1.2)
P 		94
C 98.8
(3)
P 		16.7
(-2.3)
A 		5.6
(-3)
A 		44.6
(-0.5)
P 		93
avr 96.6
(3) 		18.6
(-2.3) 		7.5
(-3) 		49.9
(-0.1) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 71.5
(3)
A 		45
(0.5)
A 		17.4
(-2.1)
A 		11.1
(-2.7)
A 		7.8
(-3)
A 		23.9
(-1.5)
A 		64
B 39.3
(-0)
A 		18.2
(-1.9)
A 		9.9
(-2.6)
A 		74.3
(3)
A 		5
(-3)
A 		12.9
(-2.3)
A 		69
C 47.7
(3)
A 		12
(-2.6)
A 		14.7
(-2.2)
A 		12.7
(-2.5)
A 		9.3
(-3)
A 		32.3
(0.6)
A 		38
avr 52.8
(3) 		25.1
(-0.7) 		14
(-2.1) 		32.7
(0.3) 		7.4
(-3) 		23
(-0.9) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 32.6
(3)
P 		4.3
(-2.6)
A 		2.3
(-3)
A 		4.6
(-2.5)
A 		30
B 32.3
(3)
P 		4.8
(-2.4)
A 		1.8
(-3)
A 		15.8
(-0.2)
P 		31
C 32.7
(3)
P 		4.8
(-2.5)
A 		2
(-3)
A 		7.5
(-1.9)
P 		31
avr 32.5
(3) 		4.6
(-2.5) 		2
(-3) 		9.3
(-1.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 13.2
(1.8)
A 		16
(3)
A 		3.8
(-2.4)
A 		2.8
(-2.8)
A 		2.4
(-3)
A 		5.8
(-1.5)
A 		14
B 13.7
(1)
A 		6.1
(-1.6)
A 		2.4
(-2.9)
A 		19.7
(3)
A 		2
(-3)
A 		4.8
(-2.1)
A 		18
C 17.7
(3)
A 		3.7
(-2.6)
A 		3.7
(-2.6)
A 		2.6
(-3)
A 		3
(-2.8)
A 		10.8
(0.3)
A 		15
avr 14.9
(3) 		8.6
(-0) 		3.3
(-2.6) 		8.4
(-0.1) 		2.5
(-3) 		7.1
(-0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5534
Sequence Type Exemplar sequence
Representative Public ID F56D12.4 NCBI
Target Description F56D12.4 /REP_DB=WormBase Gene ID /WP=CE11252 /TR=O16645 /GB=AAB66118.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061549(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061549 NCBI Caenorhabditis elegans JNK Interacting Protein (scaffold protein) family member (jip-1) (jip-1) mRNA, complete cds. 10/11 None
SNAP00000013797 ENSEMBL cdna:SNAP chromosome:CEL140:II:1327007:1332692:1 10/11 None
GENEFINDER00000013805 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1327007:1332952:1 10/11 None
F56D12.4 ENSEMBL cdna:known chromosome:CEL140:II:1327001:1350118:1 gene:F56D12.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1327005-1335646(+) 97.6 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jip-1
Ensembl F56D12.4
Entrez Gene 173513 Entrez gene
SwissProt O16643 EMBL-EBI
WormBase CE37024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66117 Jnk interacting protein (scaffold protein) protein 1 [Caenorhabditis elegans] ref|NP_493950.2| JNK Interacting Protein (scaffold protein) family member (jip-1) [Caenorhabditis elegans] 0.0
blast C88042 protein F56D12.4 [imported] - Caenorhabditis elegans 0.0
blast CAE62912 Hypothetical protein CBG07104 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:186423_AT
cagaatgattacactcaggctccgcctacttttaatattggctcagatttggaggataat
attactgaggaggaggaggaagacgatgaggaagatgaggaggatgtcagaaagacggaa
gaggtttggcctgaaaacgccacagccaacttttgctggtcagacggtgtgcgccgtgtc
catcgcagtgccacatttcaaatcaatcgatatttggatgatgacgtcacggatggaggt
acagtatccccaccacttcctcggattactgtatctcgctccgcccactcacagctctac
aatttgggcgccgaggagacggaagacgatgcggatggggatggggatgatgatgatgac
gtggcagaaaatttgaatgaaaattgcagttccggagtgtcacagttggatgaaactgaa
aagttacccttccattatttattcctttccactctgtacgtcacaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATGATTACACTCAGGCTCCGC 218 205 985 Antisense
AGGCTCCGCCTACTTTTAATATTGG 634 53 1001 Antisense
GGTTTGGCCTGAAAACGCCACAGCC 70 505 1107 Antisense
ACGCCACAGCCAACTTTTGCTGGTC 710 89 1121 Antisense
TTTTGCTGGTCAGACGGTGTGCGCC 688 673 1135 Antisense
TCCATCGCAGTGCCACATTTCAAAT 317 591 1163 Antisense
GGATGGAGGTACAGTATCCCCACCA 141 511 1215 Antisense
ACTTCCTCGGATTACTGTATCTCGC 71 105 1239 Antisense
GCTCTACAATTTGGGCGCCGAGGAG 305 299 1278 Antisense
ATTGCAGTTCCGGAGTGTCACAGTT 260 5 1367 Antisense
CTTTCCACTCTGTACGTCACAAAAT 267 223 1429 Antisense
Sequence Source Affymetrix Proprietary Database