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[186422_at]

Description F59H6.12 /REP_DB=WormBase Gene ID /WP=CE20918 /TR=Q9N5P7 /GB=AAF39860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 52.9
(-0.3)
A 		18
(-3)
A 		50.8
(-0.5)
A 		96.7
(3)
P 		79
B 37.5
(-2.6)
A 		73.8
(0.2)
P 		32.1
(-3)
A 		111.3
(3)
P 		79
C 49.5
(-1.6)
A 		17.7
(-3)
A 		64.9
(-1)
A 		157.4
(3)
P 		140
avr 46.6
(-2.3) 		36.5
(-3) 		49.3
(-2.1) 		121.8
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 30.2
(-1.7)
A 		37.4
(-0.3)
A 		23.8
(-3)
A 		51.8
(2.5)
A 		54.3
(3)
A 		36.8
(-0.4)
A 		31
B 27.4
(-1.4)
A 		35.8
(-0.1)
A 		17
(-3)
A 		56
(3)
A 		43.5
(1.1)
A 		52.9
(2.5)
M 		39
C 45.5
(0.1)
A 		53.4
(1.4)
A 		30.7
(-2.3)
A 		43.5
(-0.2)
A 		63.5
(3)
A 		26.2
(-3)
A 		37
avr 34.4
(-0.9) 		42.2
(0.7) 		23.8
(-3) 		50.4
(2.3) 		53.8
(3) 		38.6
(-0) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.3
(3)
A 		3.9
(-3)
A 		13.3
(0.7)
A 		14.2
(1)
P 		15
B 12
(-1.3)
A 		18.2
(1)
P 		7.4
(-3)
A 		23.7
(3)
P 		16
C 16.4
(0.2)
A 		5.1
(-3)
A 		22.6
(1.9)
A 		26.5
(3)
P 		21
avr 15.9
(0.3) 		9.1
(-3) 		14.4
(-0.4) 		21.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.6
(-2.8)
A 		13.3
(1.3)
A 		5.2
(-3)
A 		13.1
(1.2)
A 		16.4
(3)
A 		9
(-1)
A 		11
B 9.5
(-0.9)
A 		11.9
(0)
A 		4.1
(-3)
A 		14.8
(1.1)
A 		17.7
(2.2)
A 		19.7
(3)
M 		16
C 16.9
(1.3)
A 		16.3
(1)
A 		7.8
(-3)
A 		8.7
(-2.6)
A 		20.5
(3)
A 		8.8
(-2.5)
A 		13
avr 10.7
(-0.6) 		13.8
(0.9) 		5.7
(-3) 		12.2
(0.1) 		18.2
(3) 		12.5
(0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5260
Sequence Type Exemplar sequence
Representative Public ID F59H6.12 NCBI
Target Description F59H6.12 /REP_DB=WormBase Gene ID /WP=CE20918 /TR=Q9N5P7 /GB=AAF39860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061758 NCBI Caenorhabditis elegans F59H6.12 (F59H6.12) mRNA, complete cds. 11/11 None
F59H6.12 ENSEMBL cdna:known chromosome:CEL140:II:2032494:2033902:1 gene:F59H6.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002430 7/11 Cross Hyb Matching Probes None
GENEFINDER00000002447 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2032492-2033901(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59H6.12
Entrez Gene 186651 Entrez gene
SwissProt Q9N5P7 EMBL-EBI
WormBase CE20918 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39860 Hypothetical protein F59H6.12 [Caenorhabditis elegans] ref|NP_494159.1| F59H6.12 [Caenorhabditis elegans] 1.0E-115
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 2.0E-42
blast AAB66042 Hypothetical protein B0047.2 [Caenorhabditis elegans] ref|NP_494162.2| B0047.2 [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-33
Sequence
Target Sequence 
>C. ELEGANS:186422_AT
tgcgcgcgcagaaggtgttcaacagagcgcccaacgaaggaacggatgcaattctggtga
ttggagacaagaagcttcatgtttccaaagcgttcctctccttccactcaaacttcttcc
gtaaacttttctcatcaaatttcaaagaatctgaaatgactgagattccaatcaaggatg
ttacgtacgaggacttttgcctgatgctgggcacaatctacccgagaacaatttttccaa
atgatgaaacttccgagaaacttctcgaaatggctgatcgtttcctgattccagctgtaa
ctaatattgtggaacagcaacttctctacaacagccaaatgcaaaatgaaaaactgattc
gcttggcagatcaatatcaaatgaaaatgcttctcaataaatcgacttggaaggtggatt
cactcgaaaaaacaaattttaaatcaattttcaatcaaaaaatggaaccttgtcgcgata
cgaatgaaatgaagtttcttgaactttccaaaaaaattattgatatttctttaaaaaatt
ctcagtttctagaagtcccactaatctttatcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCGCGCAGAAGGTGTTCAACAG 532 583 14 Antisense
GAGCGCCCAACGAAGGAACGGATGC 626 385 38 Antisense
GAAGCTTCATGTTTCCAAAGCGTTC 675 341 84 Antisense
TCCACTCAAACTTCTTCCGTAAACT 62 287 116 Antisense
TCTTCCGTAAACTTTTCTCATCAAA 653 615 128 Antisense
GTACGAGGACTTTTGCCTGATGCTG 665 457 198 Antisense
TGCTGGGCACAATCTACCCGAGAAC 408 581 218 Antisense
TGATCGTTTCCTGATTCCAGCTGTA 48 567 288 Antisense
GGAACAGCAACTTCTCTACAACAGC 261 529 324 Antisense
AAATGGAACCTTGTCGCGATACGAA 3 121 473 Antisense
GAAGTCCCACTAATCTTTATCTTAT 5 337 565 Antisense
Sequence Source Affymetrix Proprietary Database