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[186420_at]

Description C46E10.4 /REP_DB=WormBase Gene ID /WP=CE08762 /TR=O61206 /GB=AAB96689.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 36      6grp_total > 71      4grp_total > 51      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 78.8
(2.5)
P 		83
(3)
P 		70.2
(1.6)
P 		28.4
(-3)
A 		55
B 110.9
(1)
P 		124
(3)
M 		92.7
(-1.8)
P 		84.8
(-3)
P 		39
C 91.2
(-2.2)
P 		138.1
(3)
P 		107.6
(-0.4)
P 		84.3
(-3)
P 		54
avr 93.6
(0.4) 		115
(3) 		90.2
(-0) 		65.8
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 91.8
(1.7)
P 		94.4
(1.9)
P 		105.3
(3)
P 		101.7
(2.6)
P 		68.3
(-0.6)
P 		44.3
(-3)
A 		61
B 76.3
(-1)
P 		87
(0.5)
P 		80.3
(-0.4)
P 		105
(3)
P 		89.9
(0.9)
P 		61.8
(-3)
P 		43
C 79.3
(-0.8)
P 		87.1
(0.2)
P 		61.7
(-3)
P 		109.1
(3)
P 		83.7
(-0.2)
P 		65.6
(-2.5)
P 		47
avr 82.5
(0.2) 		89.5
(1) 		82.4
(0.1) 		105.3
(3) 		80.6
(-0.1) 		57.2
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 28.7
(3)
P 		18
(0.4)
P 		18.3
(0.5)
P 		4.2
(-3)
A 		25
B 35.4
(3)
P 		30.6
(1.3)
M 		21.5
(-1.8)
P 		18.1
(-3)
P 		17
C 30.2
(0.8)
P 		39.7
(3)
P 		37.5
(2.5)
P 		14.2
(-3)
P 		26
avr 31.4
(3) 		29.4
(2.4) 		25.8
(1.3) 		12.2
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.9
(-1.4)
P 		33.6
(3)
P 		22.9
(0.2)
P 		25.8
(0.9)
P 		20.6
(-0.4)
P 		10.8
(-3)
A 		23
B 26.6
(-0.5)
P 		29
(0.4)
P 		19.5
(-3)
P 		27.8
(-0.1)
P 		36.5
(3)
P 		23.1
(-1.7)
P 		17
C 29.4
(3)
P 		26.6
(1.8)
P 		15.7
(-3)
P 		21.9
(-0.3)
P 		27.1
(2)
P 		22
(-0.2)
P 		14
avr 24.3
(0.1) 		29.7
(3) 		19.4
(-2.6) 		25.2
(0.6) 		28.1
(2.1) 		18.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4878
Sequence Type Exemplar sequence
Representative Public ID C46E10.4 NCBI
Target Description C46E10.4 /REP_DB=WormBase Gene ID /WP=CE08762 /TR=O61206 /GB=AAB96689.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062227 NCBI Caenorhabditis elegans C46E10.4 (C46E10.4) mRNA, complete cds. 11/11 None
SNAP00000007034 ENSEMBL cdna:SNAP chromosome:CEL140:II:3717261:3719566:1 11/11 None
GENEFINDER00000007045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3717261:3720762:1 11/11 None
C46E10.4 ENSEMBL cdna:known chromosome:CEL140:II:3717132:3719692:1 gene:C46E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3717259-3719565(+) 99.71 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E10.4
Entrez Gene 173715 Entrez gene
SwissProt O61206 EMBL-EBI
WormBase CE29724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96689 Hypothetical protein C46E10.4 [Caenorhabditis elegans] ref|NP_494628.2| C46E10.4 [Caenorhabditis elegans] 0.0
blast D88108 protein C46E10.4 [imported] - Caenorhabditis elegans 1.0E-161
blast AAB96690 Hypothetical protein C46E10.5 [Caenorhabditis elegans] ref|NP_494625.1| C46E10.5 [Caenorhabditis elegans] 9.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007045 1 404-426
Sequence
Target Sequence 
>C. ELEGANS:186420_AT
gggagacgcagtacgaagttcgacgaaacttcggacagcggagaaatcccgaggaggcat
tcatcaagctctttgatgcttatatcagcactggaacaaccattgagaagttacttttta
ctggatttccaaaatttctcaagaagagggacccgtcaaagttgcaattcaaagttcgag
agctgaaactctcaagtttgcgcgatcggactctagagaaaatcgttccatttattgggg
ctagtaagctgaagaaaatgaacttggatgttgggccggatacgattagctatctggatc
taccaatgatcaaaaattgcgaggtcttgaatctgaacatttcaatgtggaacgaaagaa
atcgacaaagaaacgaaaacaacaatttttcaaagttgagcaaccttcggaacatgaagc
tcaatttgatccttgagaggttcaccattgatgatttgcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGACGCAGTACGAAGTTCGACG 577 495 428 Antisense
GTTCGACGAAACTTCGGACAGCGGA 119 441 445 Antisense
GAAATCCCGAGGAGGCATTCATCAA 284 361 470 Antisense
GAGGGACCCGTCAAAGTTGCAATTC 544 401 573 Antisense
GAGCTGAAACTCTCAAGTTTGCGCG 213 387 607 Antisense
GTTTGCGCGATCGGACTCTAGAGAA 508 451 623 Antisense
AAATCGTTCCATTTATTGGGGCTAG 263 115 647 Antisense
GGATGTTGGGCCGGATACGATTAGC 40 515 693 Antisense
TACGATTAGCTATCTGGATCTACCA 594 647 708 Antisense
AAGTTGAGCAACCTTCGGAACATGA 343 155 820 Antisense
GGTTCACCATTGATGATTTGCAGCG 559 505 866 Antisense
Sequence Source Affymetrix Proprietary Database