[Home] | [Total List]

[186419_at]

Description T09E11.11 /REP_DB=WormBase Gene ID /WP=CE13517 /TR=O02311 /GB=CAB03538.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 57      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 251.9
(3)
P 		109.1
(-2)
P 		80.8
(-3)
P 		138.9
(-1)
P 		171
B 199.7
(3)
P 		126.9
(-0.5)
P 		74.9
(-3)
P 		113.2
(-1.2)
P 		125
C 227.4
(3)
P 		109.8
(-1.6)
P 		72.8
(-3)
P 		90.5
(-2.3)
P 		155
avr 226.3
(3) 		115.3
(-1.4) 		76.2
(-3) 		114.2
(-1.5) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 96.7
(-0)
P 		86.9
(-0.8)
P 		76.9
(-1.7)
P 		61.2
(-3)
P 		65.9
(-2.6)
P 		132.4
(3)
P 		71
B 115.7
(1.7)
P 		66.5
(-1.4)
P 		42.2
(-3)
P 		113.4
(1.6)
P 		52.5
(-2.3)
P 		136
(3)
P 		94
C 90.2
(-0.2)
P 		71
(-2)
P 		97
(0.4)
P 		83
(-0.9)
P 		59.9
(-3)
P 		124.6
(3)
P 		65
avr 100.9
(0.5) 		74.8
(-1.7) 		72
(-1.9) 		85.9
(-0.8) 		59.4
(-3) 		131
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 91.7
(3)
P 		23.7
(-2.7)
P 		21.1
(-2.9)
P 		20.3
(-3)
P 		71
B 63.7
(3)
P 		31.3
(-1.2)
P 		17.3
(-3)
P 		24.1
(-2.1)
P 		46
C 75.3
(3)
P 		31.6
(-1.4)
P 		25.4
(-2)
P 		15.3
(-3)
P 		60
avr 76.9
(3) 		28.9
(-2.1) 		21.3
(-2.9) 		19.9
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 17.8
(-2.2)
P 		30.9
(2.5)
P 		16.7
(-2.6)
P 		15.5
(-3)
P 		19.9
(-1.4)
P 		32.2
(3)
P 		17
B 40.2
(1.4)
P 		22.1
(-1.2)
P 		10.2
(-3)
P 		30
(-0.1)
P 		21.3
(-1.4)
P 		50.7
(3)
P 		41
C 33.4
(1)
P 		21.7
(-1.8)
P 		24.7
(-1.1)
P 		16.7
(-3)
P 		19.4
(-2.4)
P 		41.7
(3)
P 		25
avr 30.5
(0.3) 		24.9
(-1.1) 		17.2
(-3) 		20.7
(-2.1) 		20.2
(-2.3) 		41.5
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1706
Sequence Type Exemplar sequence
Representative Public ID T09E11.11 NCBI
Target Description T09E11.11 /REP_DB=WormBase Gene ID /WP=CE13517 /TR=O02311 /GB=CAB03538.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060722 NCBI Caenorhabditis elegans T09E11.11 (T09E11.11) mRNA, complete cds. 11/11 None
T09E11.11 ENSEMBL cdna:known chromosome:CEL140:I:12351804:12353824:1 gene:T09E11.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042471 5/11 Cross Hyb Matching Probes None
SNAP00000042460 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12351734-12353755(+) 97.14 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.11
Entrez Gene 188339 Entrez gene
SwissProt O02311 EMBL-EBI
WormBase CE13517 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03538 Hypothetical protein T09E11.11 [Caenorhabditis elegans] ref|NP_493123.1| T09E11.11 [Caenorhabditis elegans] 0.0
blast CAA15841 Hypothetical protein C47F8.3 [Caenorhabditis elegans] emb|CAB04502.1| Hypothetical protein C47F8.3 [Caenorhabditis elegans] ref|NP_493113.1| C47F8.3 [Caenorhabditis elegans] 5.0E-61
blast CAB05616 Hypothetical protein T15D6.5 [Caenorhabditis elegans] ref|NP_493136.1| T15D6.5 [Caenorhabditis elegans] 9.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 4.4E-69
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493123.1 1 91-110
T09E11.11 1 91-110
Sequence
Target Sequence 
>C. ELEGANS:186419_AT
gaaatcaaatcttcttgggctccaagacctgaaatcctaatgctaattgtgacaagaaca
gatagtttttcacgacgtaacattttgaggaaaacttcgatgagcaacacaggaaacaaa
acattgaagaagcttgtgatggaagaagcagagtccaatggtgatatggttttggcggat
ttgcaggacacttatgataacttaccgtttaaggtggttccctcgatgcaccatgtccta
gctttctccgacacaatgaattctaggtatgttcccgaaactgcatataactgctccaaa
taccctgtctacgtgatgggcccattttacctaacaaccagggatgctgcaaaactgata
cttgctcattcaagatttcaaaactttataacggtggaagacgcacttataacaggaatt
cttgccagtgatcttgggattgtgagaaaaagtcttccaatggtttttaggtttcagtat
aataatccaaacgggaaggacgttcttgcatggcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCAAATCTTCTTGGGCTCCAA 234 363 475 Antisense
TGGGCTCCAAGACCTGAAATCCTAA 413 553 490 Antisense
GGTGATATGGTTTTGGCGGATTTGC 605 499 634 Antisense
GGCGGATTTGCAGGACACTTATGAT 324 541 648 Antisense
TTAAGGTGGTTCCCTCGATGCACCA 475 671 683 Antisense
TCCTAGCTTTCTCCGACACAATGAA 186 593 710 Antisense
TTCTAGGTATGTTCCCGAAACTGCA 567 689 735 Antisense
GCATATAACTGCTCCAAATACCCTG 175 307 757 Antisense
ATACCCTGTCTACGTGATGGGCCCA 557 21 774 Antisense
TGATGGGCCCATTTTACCTAACAAC 351 567 788 Antisense
GGGAAGGACGTTCTTGCATGGCATA 684 493 967 Antisense
Sequence Source Affymetrix Proprietary Database