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[186418_at]

Description Y41C4A.13 /REP_DB=WormBase Gene ID /WP=CE20253 /TR=Q9XWU2 /GB=CAA21550.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 02      6grp_total > 06      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2558
1 2 3 4 range
A 3739
(3)
P 		3007.4
(0.8)
P 		2532.8
(-0.6)
P 		1724.5
(-3)
P 		2015
B 4089.9
(3)
P 		3038.8
(0.3)
P 		2345.7
(-1.5)
P 		1785.3
(-3)
P 		2305
C 3418.1
(3)
P 		3205.9
(2.3)
P 		2260.2
(-0.7)
P 		1532
(-3)
P 		1886
avr 3749
(3) 		3084
(1.1) 		2379.6
(-1) 		1680.6
(-3) 		2068

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3074
1 2 3 4 5 6 range
A 3750.2
(3)
P 		2798.1
(0.2)
P 		1766.2
(-2.8)
P 		1867.5
(-2.5)
P 		1710.2
(-3)
P 		1815
(-2.7)
P 		2040
B 3523.3
(3)
P 		2317.5
(-0.6)
P 		2049.8
(-1.4)
P 		1810
(-2.1)
P 		1763.3
(-2.2)
P 		1505.1
(-3)
P 		2018
C 4558.2
(3)
P 		2084.5
(-1.8)
P 		2603.5
(-0.8)
P 		1728.9
(-2.5)
P 		1866.9
(-2.3)
P 		1484
(-3)
P 		3074
avr 3943.9
(3) 		2400
(-1) 		2139.8
(-1.6) 		1802.1
(-2.5) 		1780.1
(-2.5) 		1601.4
(-3) 		2343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1109
1 2 3 4 range
A 1361.4
(3)
P 		652.8
(-0.8)
P 		662.1
(-0.8)
P 		252.4
(-3)
P 		1109
B 1304.2
(3)
P 		750.5
(-0.6)
P 		543.5
(-1.9)
P 		380.4
(-3)
P 		924
C 1131.5
(3)
P 		921.7
(1.6)
P 		787.8
(0.6)
P 		258.3
(-3)
P 		873
avr 1265.7
(3) 		775
(-0) 		664.5
(-0.7) 		297
(-3) 		969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1342
1 2 3 4 5 6 range
A 691.3
(0)
P 		995.2
(3)
P 		384.6
(-3)
P 		473.6
(-2.1)
P 		516.1
(-1.7)
P 		441.9
(-2.4)
P 		611
B 1225.9
(3)
P 		771.4
(-0.7)
P 		497.8
(-2.9)
P 		479.4
(-3)
P 		716.4
(-1.1)
P 		561.2
(-2.3)
P 		747
C 1689.5
(3)
P 		636
(-1.7)
P 		662.6
(-1.6)
P 		347.7
(-3)
P 		604.1
(-1.9)
P 		496.8
(-2.3)
P 		1342
avr 1202.2
(3) 		800.9
(-0.1) 		515
(-2.4) 		433.6
(-3) 		612.2
(-1.6) 		500
(-2.5) 		769
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6235
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.13 NCBI
Target Description Y41C4A.13 /REP_DB=WormBase Gene ID /WP=CE20253 /TR=Q9XWU2 /GB=CAA21550.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067119 NCBI Caenorhabditis elegans Y41C4A.13 (Y41C4A.13) mRNA, complete cds. 11/11 None
Y41C4A.13 ENSEMBL cdna:known chromosome:CEL140:III:11733244:11737503:-1 gene:Y41C4A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034913 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11733536-11737485(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.13
Entrez Gene 189815 Entrez gene
SwissProt Q9XWU2 EMBL-EBI
WormBase CE20253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21550 Hypothetical protein Y41C4A.13 [Caenorhabditis elegans] ref|NP_499520.1| Y41C4A.13 [Caenorhabditis elegans] 1.0E-49
blast CAE67664 Hypothetical protein CBG13227 [Caenorhabditis briggsae] 9.0E-49
blast CAE66586 Hypothetical protein CBG11905 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499520.1 1 74-96
Y41C4A.13 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:186418_AT
ccgcgtgcattggactcgcaatggctgccaacgtggaccacgacgtgaaaagtgcagtga
atgaggtcaccactacaaaggacggagacacatattgcccggtaccattggtcggaacca
aatgcggaacctctagcatcttccactactggaaatgctgtggagaactcaacaaggaat
gctgctttaacctccagacatgggtctgggtaaccctcgccttgttcggagtcatcttca
tcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCGTGCATTGGACTCGCAATGGC 582 259 35 Antisense
CGCAATGGCTGCCAACGTGGACCAC 481 253 51 Antisense
GGACCACGACGTGAAAAGTGCAGTG 567 517 69 Antisense
GAGGTCACCACTACAAAGGACGGAG 383 401 97 Antisense
GACGGAGACACATATTGCCCGGTAC 54 377 115 Antisense
TGCCCGGTACCATTGGTCGGAACCA 517 581 130 Antisense
AAATGCGGAACCTCTAGCATCTTCC 346 119 154 Antisense
AGCATCTTCCACTACTGGAAATGCT 699 77 169 Antisense
GAATGCTGCTTTAACCTCCAGACAT 400 331 211 Antisense
AGACATGGGTCTGGGTAACCCTCGC 596 69 230 Antisense
CCTTGTTCGGAGTCATCTTCATCGC 188 269 254 Antisense
Sequence Source Affymetrix Proprietary Database