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[186416_at]

Description F18F11.3 /REP_DB=WormBase Gene ID /WP=CE17686 /TR=P91261 /GB=AAB42286.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 17.4
(-1.3)
A 		2
(-3)
A 		39.9
(1.3)
A 		54.8
(3)
P 		53
B 33.4
(1.6)
A 		41.7
(3)
A 		5.4
(-3)
A 		26.6
(0.5)
A 		36
C 6.7
(-3)
A 		16.4
(-2.1)
A 		6.8
(-3)
A 		72.4
(3)
P 		66
avr 19.2
(-2.7) 		20
(-2.5) 		17.4
(-3) 		51.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 59.2
(3)
A 		11.1
(-2.4)
A 		13.5
(-2.1)
A 		12.8
(-2.2)
A 		43.6
(1.3)
A 		5.6
(-3)
A 		54
B 17.4
(-0.4)
A 		4.6
(-2.7)
A 		35.9
(3)
A 		28.5
(1.6)
A 		19.7
(0)
P 		3.2
(-3)
A 		33
C 2.5
(-3)
A 		29.9
(0.3)
A 		52.8
(3)
A 		34.4
(0.8)
A 		22.6
(-0.6)
A 		21.7
(-0.7)
A 		50
avr 26.4
(1.1) 		15.2
(-1.7) 		34.1
(3) 		25.2
(0.8) 		28.6
(1.6) 		10.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.3
(0.5)
A 		0.4
(-3)
A 		10.4
(3)
A 		8
(1.6)
P 		10
B 10.7
(3)
A 		10.3
(2.7)
A 		1.3
(-3)
A 		5.7
(-0.2)
A 		9
C 2.2
(-3)
A 		4.7
(-1.5)
A 		2.4
(-2.9)
A 		12.2
(3)
P 		10
avr 6.4
(-0.4) 		5.1
(-2.4) 		4.7
(-3) 		8.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.9
(1.8)
A 		4
(-1.7)
A 		2.9
(-2.2)
A 		3.2
(-2.1)
A 		13.2
(3)
A 		1.4
(-3)
A 		12
B 6
(0.8)
A 		1.5
(-2.8)
A 		8.7
(3)
A 		7.5
(2)
A 		8
(2.4)
P 		1.2
(-3)
A 		8
C 0.9
(-3)
A 		9.1
(0.9)
A 		13.4
(3)
A 		6.9
(-0.1)
A 		7.3
(0.1)
A 		7.3
(0.1)
A 		13
avr 5.9
(-0.5) 		4.9
(-1.5) 		8.3
(1.8) 		5.9
(-0.5) 		9.5
(3) 		3.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10539
Sequence Type Exemplar sequence
Representative Public ID F18F11.3 NCBI
Target Description F18F11.3 /REP_DB=WormBase Gene ID /WP=CE17686 /TR=P91261 /GB=AAB42286.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067507 NCBI Caenorhabditis elegans F18F11.3 (F18F11.3) mRNA, complete cds. 11/11 None
SNAP00000041662 ENSEMBL cdna:SNAP chromosome:CEL140:IV:345180:349047:1 10/11 None
GENEFINDER00000041664 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:345173:349105:1 11/11 None
F18F11.3 ENSEMBL cdna:known chromosome:CEL140:IV:344343:358882:1 gene:F18F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:344928-347347(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18F11.3
Entrez Gene 184652 Entrez gene
WormBase CE38065 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637488_AT dm
DROSGENOME1:149910_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_499908 F18F11.3 [Caenorhabditis elegans] 0.0
blast T33757 hypothetical protein Y66H1B.1 - Caenorhabditis elegans 0.0
blast CAE65552 Hypothetical protein CBG10540 [Caenorhabditis briggsae] 0.0
blast NP_499908 F18F11.3 [Caenorhabditis elegans] 1.0E-179
blast T25702 hypothetical protein F18F11.3 - Caenorhabditis elegans 1.0E-154
blast NP_499908 F18F11.3 [Caenorhabditis elegans] 1.0E-114
blast CAE65551 Hypothetical protein CBG10539 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 8.2E-10
Pfam IPR002126 EMBL-EBI Cadherin 4.5E-11
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-16
Pfam IPR002126 EMBL-EBI Cadherin 3.8E-11
Pfam IPR002126 EMBL-EBI Cadherin 6.7E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499908.2 2 42-64,1584-1606
F18F11.3 2 42-64,1584-1606
Sequence
Target Sequence 
>C. ELEGANS:186416_AT
aatgctcaacacaattacgtctggcaaagaaacttgatttcgaagaaaagccaattcata
ctttcaacattactgcaaaggacggcgacccacattccaatagaacacatacagttgccc
atactgttacaatacatgtgaaaaatgagaatgacgaacctccaaaatttctgaccgatt
tctctcaagttttcccaattttcaaatctaccaagcctggagatataattgcaaaacttg
aagctatcgatgtggaaaatggtgcggaaattcaatttgggatgaaagaaaatgaacatt
taaaaattgattcaaaatctggcaatgttcttttgaaaaaactacccacagatgatgcgc
tgataactgtggaactgtatgccacgtcatcaaaaaacggaaaatcaaaaaccgtagaaa
tgaaactaagactcatgaacgacgaggcaactttacctaaaatagcggaaaatcaggaaa
agcctgaactttgtgagtttccaatttacgaagctcatttgattcaagggactggaactt
tctcaacaccgctcaagattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTCAACACAATTACGTCTGGC 363 165 347 Antisense
TTACTGCAAAGGACGGCGACCCACA 468 683 416 Antisense
GCGACCCACATTCCAATAGAACACA 288 289 431 Antisense
TAGAACACATACAGTTGCCCATACT 228 653 447 Antisense
GACGAACCTCCAAAATTTCTGACCG 632 379 499 Antisense
ATTTCTGACCGATTTCTCTCAAGTT 283 17 513 Antisense
TTCTCTCAAGTTTTCCCAATTTTCA 412 691 526 Antisense
AAAAACTACCCACAGATGATGCGCT 57 129 683 Antisense
GATGCGCTGATAACTGTGGAACTGT 380 415 700 Antisense
CAAGGGACTGGAACTTTCTCAACAC 495 183 871 Antisense
CTTTCTCAACACCGCTCAAGATTAA 117 223 884 Antisense
Sequence Source Affymetrix Proprietary Database